Oncorhynchus mykiss (rainbow trout): 110506963
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Entry
110506963 CDS
T07259
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04350
TGF-beta signaling pathway
omy04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
110506963
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
110506963
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110506963
Cell adhesion molecules [BR:
omy04515
]
Immunoglobulin superfamily
DCC/UNC5 family
110506963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
Pur_ac_phosph_N
ig
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
Ig_RIMBP2
fn3_SORL1
Tissue_fac
Sp38
EphA2_TM
Herpes_UL74
Bile_Hydr_Trans
Motif
Other DBs
NCBI-GeneID:
110506963
NCBI-ProteinID:
XP_036819067
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All DBs
Position
26:complement(46808523..47019862)
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AA seq
1509 aa
AA seq
DB search
MAERGARLLLSLLCLTFLYPATTVSRHAEKGTAARPFSPFWFSVEPWDTLAVRGAPALLN
CSAHSGDPASEPTAPQARVEWKKDGTFLSLAPDDGRRRVLPDGSLLISSVVHSKHNKPDE
GTYQCVATIDSLGTIASRTARLTVAGMPRFSSQPAAASIRLGDSQVLACDVNPDLVPLAR
WEREREPLELSSRLVQLPNGALVVSNASEADAGLYRCMVENAGPVKTSEEAQLTILPETG
EERELEFLVEPLPVTKVVGASLLLPCVVTGYPAPYVRWMVGDKLVEESEGKLELVGGGSL
LIYNLTEEDAGVYSCMADITNNTIEAKAELTVQVPPEFLKRPANIYAHESMDIMFQCEVT
GSPAPTVKWVKNGDAVIPSDYFKIINEHNLQVLGLVKSDEGFYQCLAENDAGNMQSSAQL
IILEHDVALPTPPPPSLTPDTTDHVTPGSRGVANPTGPTPSAPRDVVASLVSTRFIKLTW
RPPAEPNGEDLTYSVYFNQEGTNRERILNTSRPGEMQVTIQNLMPDSKYKFRVVAHNKNG
LGESSAVLKVATQGEVQVPGPAPNLQAVSTTPTSVTLSWDTPLTGNGDVLTYKVYYMEKG
LDLEQDIDAGALSYTLMGLKKFTEYSIRVVAFNKHGPGVSTGDITVTTLSDVPSAPPQNL
TVEVHNSKSIMVRWQPPPPGAQNGEITGYKIRYRKGTRKSEAAETTGGTQLFQLIDGLER
GTEYTFRVSAITVNGSGPATEWSTAETFESDLDESRVPDIPSSLHVRPLVNSIVVSWTPP
ENQDMVVRGYTIGYGIGSPHAQTIKVDYKQRYYSIENLDPSSHYVITLKAFNNVGEGIPV
YESAITRPQSDPIDPDVDLYELFHAPYTPVPDPTPMLPPVGVQASVLSHDTIKVTWADNS
LPKNQKITDARYYTVRWKTNIPANTKLKTANTTNLSHMVTGLKPNTLYEFSVMVTKGRRT
STWSMTAQGTTFETIPSSSPKDVTVVSKELKPRTIIVNWQPPSEANGKITGYIIYYSTDV
NAEVHDWVIEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSD
KMANDQANLPVKPGSNQPPLDHGFGSSHGKPGITGSGDNHILVIVVIISVGAFTIIVVVV
GAFLCTRRTTSHQKKKRAASKSSNSSHKYKGNSKDLKPPDLWIHHERLELKPIDKSPEPN
PVMTDTPIPRTSQDINPVDPSLDNSLLQRRNSYRGHESEDSISALAGRRGMRPKMMMPFD
TQPPQPVISAHPIHSLDNHHHHYHTGSLASPTRSYLHHHQGSAHLRPHACATPISYLDMV
GSTESVRNTPSTEPLPPQAQPPCQAEHQHPEPEGSYQDSTATDDEPSASGSYCSAGQPPT
AHVRPTHPLKSFAVPANPAAIFESPALPSMPLLTQTGPQLHSVKTASIGTLGRVRPPMSV
TVPSAPDVPETSKMLEDVDSVLASLPSCSSLAPRSNPVPFPQSYEPDELTEEMAHLEDLM
KDLNAITTA
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggggagcaaggttgctcctctctctcctctgtctcacctttctttacccg
gcgaccaccgtgtcaagacatgctgaaaaaggcacggcggcgaggcccttcagccccttc
tggttctcagtggagccgtgggacacactggctgtgagaggtgccccagcactgctcaac
tgctcagcgcacagcggagaccctgcctcagagcccactgcgccccaggcccgtgtggag
tggaagaaggatggaaccttcctgagcctggcgccagacgacgggcggcgacgtgtcctg
cctgacggctcgctgctcatctctagcgtggtgcactccaagcacaacaagcccgacgag
ggcacgtaccagtgtgtggccaccatcgacagcctgggaaccatcgccagccgaaccgcc
cgcctcaccgtggcaggtatgccccggttctccagccagccggcagcagccagcatacgc
ctgggagacagccaggttctggcctgcgatgtcaacccagacctggtgcctttagcccgg
tgggagcgtgagcgtgagcccctggagctgagctctaggctggtgcagctacccaacgga
gccctggtggtgagcaacgcttcggaggccgacgctgggctctaccgctgcatggtggag
aacgctgggcccgtcaagaccagtgaagaggcccagctcacaatactgccagaaaccgga
gaggagagagaactggagttcctggtagagccacttcctgtgaccaaagtggtgggggcc
agtttgctgctgccgtgtgtggtgacgggttatccagcgccctacgtccgatggatggtg
ggagacaagcttgttgaggagagtgaggggaagttggagttggtgggaggaggcagtctg
ttgatctacaacctgactgaggaggatgcaggcgtctacagctgtatggcagacatcact
aacaacactatcgaggccaaggcagagctcactgtacaagttcctccggagttcctgaag
aggccggccaacatctacgcccacgagtccatggacatcatgtttcagtgtgaggtcaca
ggttcccccgcccccaccgtcaaatgggtcaaaaacggagacgctgtcattcccagcgac
tacttcaaaatcattaatgaacacaacctgcaggtgctgggtctggtcaagtctgacgag
ggcttctaccagtgtctggcagagaacgatgcagggaacatgcagtccagcgctcagctc
atcatcctagagcacgatgtagccctccccacccctcctcccccctcactgactcctgac
actactgaccatgtaacgccaggctccagaggtgtggctaaccccactggccccaccccc
tccgccccccgtgacgtcgtggcctcgctggtctccacccgcttcatcaagctcacctgg
cgccctcctgctgagcccaacggagaagacctcacctactctgtctacttcaatcaggag
ggtaccaacagggagcgtatcctgaacaccagtcggccaggtgagatgcaggtgaccatt
cagaacctgatgccggactccaagtacaagttccgggtggtggcacacaacaagaacggc
ctgggagagagctctgccgtcctcaaggtggccacccagggtgaagtgcaagttcctggc
cccgcccccaacctgcaggctgtgtcgaccacacccacctccgtcaccctcagctgggac
actcccctcactggtaacggagacgtcctcacctacaaggtctactatatggagaagggt
ctggacctggaacaggacatagacgctggagctctgtcctacaccttgatgggtctgaag
aagttcacagagtacagcattagagtggtggccttcaacaagcacggtccgggagtgtcc
acaggagacatcaccgtcaccaccctgtctgatgtccccagtgcccctcctcaaaacctc
actgtggaagttcacaactcaaagagcatcatggtccggtggcagcccccaccaccaggc
gcccagaacggcgagattactgggtataagatccgttaccggaaagggacgcggaagagc
gaggcggcagaaaccacgggaggcacccagctcttccaactcatcgacggtctggagcgg
gggacagagtacacgttcagagtatcagccatcacagtgaacggctccgggcccgccaca
gagtggagcaccgcagagaccttcgagagcgacctggacgagtccagggtgccagacatc
cccagttcgctacatgtgcgcccgctggtcaacagcatcgtggtgagctggaccccgccg
gagaaccaggacatggtggtacgaggctacaccatcggctacggcatcggcagcccccac
gcccagaccatcaaggtggactacaagcagcgctactacagcattgagaacctagacccc
agctcccactatgtgataaccctgaaggccttcaacaacgtgggggaggggatccctgta
tacgagagcgccatcaccaggccacagtcagaccccatagaccctgatgttgatttgtat
gaactcttccatgcgccatacacaccagtaccagaccccacccccatgctacctcccgtg
ggcgtacaggcctcggtgctcagccacgacaccatcaaggtgacctgggccgacaactct
ctgcccaagaaccagaagatcacggacgcacgctactacacggtgcgctggaagaccaac
atccccgccaacaccaagctcaagacggccaacaccaccaacctgagccacatggtgacg
ggcctgaagcccaacacgctctatgagttctctgtcatggtgaccaagggccggaggacc
agcacctggagcatgacggcccagggaaccacctttgagaccattcccagctcgtccccc
aaagatgtgactgtggtgagcaaggagctgaaaccacgtaccatcatagtcaactggcag
cccccctcagaggccaatggaaaaatcacaggctacataatctactacagtactgatgtg
aatgcggaggtgcatgactgggtgatagagccggtggtgggcaacaggttgacccaccag
atccaggagctgactctggacaccacctactacttcaagatccaggcccgtaactccaag
ggcatgggcccaatgtcagaggccgtacacttccgcacccccaagactgaatcctctgac
aaaatggctaatgaccaagccaatttgccagttaaaccaggaagtaaccaaccacctctt
gaccatggctttgggtcttcacacggaaaaccaggaattacaggaagtggggacaaccac
atcctggtcatcgtcgtcatcatctctgtgggagcgttcaccatcattgtggtggttgtg
ggggccttcctctgcacacgacgcaccacctcccaccagaaaaagaagcgggcggcctcc
aagtcgtccaacagctcccacaagtacaagggcaactccaaggacctgaagcctccagac
ctatggatccaccacgagcggctggagctcaagcccattgacaagtcccccgagcccaac
ccggtgatgactgacacccccatcccccgcacctcgcaggacatcaaccccgtggacccc
agcctggacaacagcctgctgcagagacggaactcctaccgaggccacgaatcagaagac
agcatatctgcgctggcagggcgccgggggatgcggcctaaaatgatgatgcccttcgat
acgcagcccccccagcccgtgattagcgctcaccccatccattcccttgataaccatcac
caccattatcacacgggcagcctggcatccccgacacgcagctacctccatcaccaccag
ggcagtgcccacctgcgcccgcacgcctgcgccacccccatctcctatctagacatggtg
ggctccacagagtcggtgaggaacacccccagcacagagcccctcccaccccaggcccag
cccccctgccaagccgagcaccagcacccggaacccgagggcagctaccaagactccacg
gccaccgacgatgaacccagcgccagcggcagctactgcagcgccggccagccccccacc
gcccacgtgcgccccactcaccccctcaagagctttgccgtgcccgccaaccccgccgcc
atcttcgagtcgcccgccctgcccagcatgccgctgcttactcagactgggccccagctc
cactcagtaaagacagcctccatcggcaccctgggcagggtccgcccccccatgtcagtc
acggtgcccagtgcgccagacgtgcccgagaccagcaagatgctggaggatgtagacagt
gtccttgcctccctcccctcctgttcctcccttgctccccgcagtaaccctgttcctttc
cctcagagctacgagcctgatgagttgacagaggagatggcccacctagaggacctgatg
aaggacctaaacgctataaccacagcctga
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