Oncorhynchus mykiss (rainbow trout): 110507056
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Entry
110507056 CDS
T07259
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110507056
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110507056
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
110507056
NCBI-ProteinID:
XP_036821526
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All DBs
Position
27:6936909..6974629
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AA seq
780 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLTGTPEPAPTSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYIISRTELPDT
PLDLLQLPESLRAERLKGSSSPSELTPQARGPQPMKSSVCKGEPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPPETRRRLEEFRQREGSVSAASDLGSESEGEERAWEQGGDSARVKRE
EGPSKRGGETPVRGGGVHSGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTHTHTS
SHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSPLPC
EERGMLSGGRGGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAPPELP
PSHPGAEGLRADHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGATGSEED
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactagccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgctcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgt
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctcccactctctggct
actgacatgtttgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcggagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggcctcacctgagggccgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctgaccgggaccccc
gagcctgcccccacaagccctctctctccagggaatgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccctcc
acgctgaacgaggtgcgcatggaaagccaaatgtttgtcttccgggtcaacatggacctg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggacacacctgctaccacttcatccacgtggaagacctggataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgaccgggtactaccgttggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacatcatcagtcgaacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaaggcagctcc
tccccttcggaactcacgccacaagctcggggtccacagccaatgaaaagctctgtgtgt
aaaggtgagcctgactctaaactgagagagatctataatcccggagtccaatcaggggac
aggaggaagcgtccgctgcggtctgactctgaaggcgctcccccagaaacgcggcgtcgc
ctggaagagttccgccagagagaggggagtgtgtccgccgcctcagacctgggcagcgag
agcgagggagaggagagagcgtgggagcaggggggagacagcgcgagggtcaaacgagag
gaggggccttcgaaacgaggtggggagaccccagtgaggggcggcggggtgcacagcggc
cgtgcggtaatccagcacctgaagagtgtagtgtcctcacctctctctggtccccacaac
atcaagactgaacatgaggcactggctgcagggggtcgctggacacacacacacacctcc
tcacacacacaacccccaccctcgcatacacacaccccttgcggcagcctgaacggcgac
agtcccccgacccctatcccggactcctcctccagcagtgaagccccacccaaaggtatt
ttcaccccgccctcccccgccatgtctcctcccatgtccggctcctcccctctaccctgt
gaggagcggggaatgttgtctggaggccgggggggcgggcctgactttgagctgttgcag
agactggcagcggggggtgctgcaggacgggtgctgttccaccccctgaccctcggcccc
caggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctgccc
ccctcccaccctggtgctgaggggctgcgcgccgaccaccacaagggccccccagccttc
ttcccccacctccagaggctggccggcctgccctccttcagtgggttctccgcctcggac
aatcccttcaaccccttctgtatgaacggactgaggggggccacagggtccgaggaggac
tga
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