Oncorhynchus mykiss (rainbow trout): 110507502
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Entry
110507502 CDS
T07259
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110507502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110507502
03019 Messenger RNA biogenesis [BR:
omy03019
]
110507502
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110507502
RNA polymerase I system
110507502
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
110507502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
110507502
NCBI-ProteinID:
XP_021443201
Ensembl:
ENSOMYG00000044373
LinkDB
All DBs
Position
27:complement(9838625..9861791)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLDE
DNSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTETPLQIKSVVAPEHVKGYIYVESYKQTHVKAA
IDGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGDF
MIFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKENRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHPGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYI
GVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTG
SRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFGYD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGS
YQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDTEK
VVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GKLEL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggaaggggaagacttggcagatgaggagtatgacgaagaggaggaa
gaggacgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggatgaa
gccgatgtggacgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggatatt
ttggagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtcctggatgag
gataactctggttcccgcaggctgcagaacctctggagagattccagagaggaggccttg
ggtgaatattacatgaggaaatatgccaagcaatccggaaatgattttcccgggggttct
gaggaactgtctgatgacatcacccagcagcagttgctccctggtgtcaaggatcctaat
ctttggacagtcaagtgtaagattggggaagagagagcaactgccattgccttgatgagg
aaattcattgcctatcaattcacagaaacgcccctccaaatcaagtcggtagtggctccc
gaacatgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagctgca
attgacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaag
gagatgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgg
gtccgactcaagagaggcctctacaaagatgacatcgcccaggtggactatgtggagccc
agtcaaaacacgatatcgctgaagatgattcccaggatagatttggacagaatcaaggcc
cggatgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccagaga
ctcttcgatgcagaaaagatcaggtcacttggtggggatgtcagccatgatggagacttc
atgatatttgaagctaaccgctacagccgcaaagggttcctcttcaagagctttgccatg
tctgctgtgatcactgaaggagtgaaacccactctgtcggagctggagaagtttgaggac
cagccagaaggcattgatctcgaggtggtgactgaaaccgcaggtaaagagcgtgagcac
aacctccaggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcagggc
aaaatcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctcaag
gatcctctggagttcccggcccacgagctgaggaagtacttccgtatgggtgaccacgtc
aaggtgatagcaggccgctacgagggtgacaccggcctcatcgtacgtgtggaggagaac
tttgtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgcccagggacttg
cagctgtgctctgagacggcatcaggggtagatgctgggggccagcacgagtggggggag
ttggtccaactggacccccagaccgtgggagttattgtcaggctggagagggagacattc
caggtcctcaacatgcatggcaaggtgctgacagtgcgtcaccaggcagtgaatcgacgg
aaagagaaccgctttgccgtggcactggactctgagcagaacaatatccacgtcaaagac
atcgtcaaggtcatcgacgggccacactcggggcgtgagggggagatccgccacattttc
cgaggctttgccttcttgcactgcaagaagctggtggagaacgggggcatgtttgtctgc
aagacacgccacgtggtgctggccgggggctccaagccccgagatgtcaccaacttcact
gtgggaggcttcgcacctatgagtccacgcatcagcagccctatgcatccaggtggtggt
ggccagcagcagaggggcggtggaggtggaggacagatggggcgtggccggggcaggagg
gacaacgacctgattggacagaccgtccgcatctcccagggaccatacaaggggtatatt
ggagtggtgaaggacgccacagagtcgacagccagagtggaactgcactcgacatgccag
accatctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggaggaatg
acttccacccacggacgcacccccatgtacggttcccagacccccatgtacgggacaggc
tcccgtacccctatgtacggctctcagacccccttacacgatgggagccgtactcctcac
tacggctcgcagacgccgctgcatgatgggagcaggacgccggggcagagcggagcgtgg
gaccccaacaaccccaacacaccgtccagggcggatgacgactatgagtttggttatgat
gacgagccctccccgtcccctcagggctacgggggcacgcctaacccccagacccccggc
tacccagaggtgccgtcaccccaggtcaacccccagtacaacccccagacaccaggcacc
ccagccatgtacaacacagaacagtactcgccgtacgctgccccctccccacagggctcg
taccagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtgggctac
caaaacacacactcaccagccagctaccaccccaccccctcacccatggcatatcaggcc
agtccgagccccagcccggtaggctacagccccatgacccccggcgccccctccccgggc
ggctacaatccccacacccccggctccaacatcgaccagacctcttgcgactgggtcacc
accgacatcctggtgcgcgttaaagacaccttcctggacagccaggtggttaaccagaca
ggcatcattcgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagagaag
gtggtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtg
aaggtgattctaggggaggaccgcgaggccacggggatcctactgagtatcgacggggac
gacggcattgtaaggatggagctggatgaccagctgaagattctcaacctccgcttcctt
ggcaaactggagctctga
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integrated database retrieval system
