Oncorhynchus mykiss (rainbow trout): 110507515
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Entry
110507515 CDS
T07259
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110507515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110507515
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110507515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ANAPC3
ARM_TT21_N
TPR_8
ARM_TT21
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
110507515
NCBI-ProteinID:
XP_036794154
LinkDB
All DBs
Position
2:13046879..13061306
Genome browser
AA seq
772 aa
AA seq
DB search
MADNNTDQEKAIAANALEAFTAGNYEESLKHLGKLQELNKEDYKIALNKAIAEFYKSGQT
TTCTLKQTLIAMKNQVHTSMEDIDGLDDVENSLLYYNQAIIHYHMRQYSEAIAIGERLYQ
FLEPFEEKFALAVCFLLVDLYLLTYQPEKALHLLAVLEKLSVQGNNKNGKGEVIFQAQCK
FYIHRDPVVEAADFIQDNLRELTGGQSVNSANKDGRNQKAEFIGMIEAAKSKMHQYKVRA
YIQMKSSKACKREIKSVMNTAGNSASSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGAI
KTGECVRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDHTCAQLGDGGATGNGQSKQFS
GIPMCALLANKRYELLYNCGIQLLHIGRPLAAFDCLMDAVQVYHSNPGLWLRLAECCIAA
NKGSLEQDNKGLPSKKGIVQAIVGQGYHRKIILASQSTQNTIYSDGQSAAIPVASMEFAA
ICLRNGLVLLPDHQQQENKAENGSKTTSQSGSTESGSENSDACSGKGQEGDKFLSAAPSS
PLRKQEVENLRCSLLACSAYVALVLGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEAL
ISLDRISEAIGHLNPENVTDVSMGVLSSEQDQVFVFTGPDKGDLEPVESSGKQTPLCYPS
TVSSARAIMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLAVYLELQNGNT
QLALQIIKRNQLLPSVLQAPSPDTRKKPVPPSFQPVQPPIQMPSPFTTVQRK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacaacacagaccaagaaaaagcaatagctgcaaatgcgttggaggcgttt
acggctggaaactatgaggaatctttgaaacaccttggaaagctgcaagagttgaacaag
gaggactacaagattgctttgaataaagcaatagctgaattctacaagagcggccaaacc
accacatgcaccctgaagcagactcttattgcaatgaaaaaccaggttcacacttcaatg
gaggatattgatggtttggatgatgtagaaaacagtcttctctactacaatcaagcaatc
attcactaccacatgagacagtactccgaagctattgctattggagagaggctgtaccag
tttctggagccgtttgaagagaagtttgctctggcggtctgcttcttgctggtggatctg
tacctgctaacgtaccagccagagaaggccctccatctccttgctgtgctggagaaactg
tctgtacagggaaataacaagaacggcaaaggggaggtaatatttcaggcacagtgcaag
ttctacattcacagggacccggtagtggaggcagcagacttcattcaggataatctcagg
gagcttactggaggacagagtgtcaacagcgccaacaaagatggtcggaaccagaaggca
gagttcattggcatgatcgaagcggcaaaatccaaaatgcaccagtacaaagtgcgagcg
tacattcagatgaagtcatcaaaggcctgcaaaagggagatcaagtctgtgatgaacaca
gcagggaattctgcttcctcactcttcctcaagagtaactttgagtacctgagaggaaac
taccgcaaagcagtgaagctcttaaacagctccaacatcgcagagcaccctggggccatc
aaaacaggtgaatgtgtgcgctgtatgttctggaacaacctgggttgcatacactttgcc
atggggaaacacaacctaggtatattctacttcaaaaaggccctgcaggagaacgaccac
acgtgtgcacagctgggggacggtggggcgacggggaacgggcaatctaagcagttctcg
ggcatccccatgtgtgcgctgctagccaacaagcgttatgagctgctgtataactgtggg
atccagctgctgcacatcggccggcccctggcggccttcgactgtctgatggatgctgtg
caggtgtaccactctaaccctggcctctggttacggttggctgagtgctgcattgctgcc
aacaagggtagcttagaacaagacaacaagggtcttccgagtaaaaagggtatcgttcag
gccatcgttgggcagggctaccatcgcaagatcatcctggcatcacagtccacccagaac
acaatctacagtgatgggcagtctgcagccattccggtggccagtatggagtttgcagcg
atctgtctgaggaacggcctggtcctcctccctgatcaccagcagcaggagaacaaggca
gagaacggctccaagacaaccagccagtcaggcagcacagagagcggctcagagaacagc
gacgcctgcagtgggaaaggtcaagaaggagacaagttcctttctgcagcaccgtcttca
cctctgaggaaacaggaggttgaaaacctcaggtgttccctcctggcctgcagtgcctac
gtggccctggtgttaggagacaacctgatggccctgaaccatgcagagaagctccttcac
cagaccaagctgtctggatcactcaagttcctgggacacctgtatgctgcagaggccctc
atatccctggaccggatctcagaggccatcggtcacctcaacccagagaacgtcactgat
gtctccatgggggtgttgtctagcgagcaggaccaagtgtttgtgttcacagggccagat
aaaggggatctggagcctgtcgagtcatcagggaagcagactcctctgtgttaccccagc
acagtgagctcagcccgggccataatgctgttcaacctgggcagtgcctattgtctgagg
agtgagtacgagaaggcccgcaagtgcctgcatcaggccgcctccatggtgaacaccaag
gagattcctcctgaagccatcttactggctgtctacctggagctgcagaacgggaacaca
cagctcgccctgcagatcatcaaacgtaaccagctcctcccctcagtgctccaggcgccc
tctccagacacacgaaagaagcctgttcccccctccttccagcctgtccaaccacccatc
cagatgccctcacccttcacaacagtccagcgcaaatga
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