Oncorhynchus mykiss (rainbow trout): 110507593
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Entry
110507593 CDS
T07259
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
omy04140
Autophagy - animal
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110507593
04137 Mitophagy - animal
110507593
04148 Efferocytosis
110507593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110507593
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110507593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
110507593
NCBI-ProteinID:
XP_036820749
Ensembl:
ENSOMYG00000040205
UniProt:
A0A8C7WDG4
LinkDB
All DBs
Position
27:13233531..13264437
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AA seq
627 aa
AA seq
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MDTKEEPVGKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEDRVTDGDEDTVDAFYPRALAGFILVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRELLAPRPGVSKKKPVQQHTEINFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLCFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETVCDSDNSSSAELSLQLKENPEDLLQLAPVSGDPIVPLTDFAEPSFSLPSS
SDSAPDFPQELCTPELWKLLSPIFSKLTSSAPALIPIEELPIEDEVAKLFAVCPDESVQK
RNQPEDMEVVDLDMLAPYISMDDDFLLSVQVPETPDSPSPEPPTATRKRSHEQDEDMPSQ
LMSQDKRPRHLVSPIQHKLLLSYALLDCLEDVDNPELELGSIPHRRSQLLTDRDPILGEA
QGLCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttggaaaacggtcgagtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttctacaagttggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcaggggacacgagtgaggaccgc
gtcacagatggggacgaggacacggtggatgcgttctacccccgggcgctggcaggcttc
atcctggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctgggcatcccacagctggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggaactcctggcgcctaggccaggtgtgtccaagaagaaacca
gtgcagcaacacacagagattaacttcttccttaggatgaagagcactctgactagtaga
gggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcatcacctcctgcaggcagcttcatgacagtgctg
tgtgagcccatcccccatccgtctagtgtggagttccccttggaccggagcacgttcctc
actcgacacagcatggacctgtgcttcacacactgcgatggcagggtgtcagagctagta
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcagatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtgggggcttcgtgtgggcagagacgcaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcggatgtggtgttctcagtagagcagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccgtgtgtgacagtgacaacagcagcagtgca
gagctctccctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtacccctcacagactttgcggagccgtcgttcagtcttccatcaagc
tctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggaagctcctc
tcacccatattcagcaagctcacctcatcagcaccagcgctgatccccattgaggagctg
ccaatagaggacgaggtggcgaagttgtttgcggtctgtccagatgagagcgtgcagaag
agaaaccagcctgaggacatggaagtggttgatctggacatgctggctccgtatatctcc
atggatgatgatttcctgctcagcgtccaggtccctgagacccctgacagcccctcccca
gagccccccactgctaccaggaaacgaagtcatgagcaggatgaagacatgccctcccag
ctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaactgctt
ctcagctacgccctgctggactgcctggaggatgtagacaacccagagttggagctgggg
tcaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggtgaagcc
cagggactatgtgacactgcagccttgatgagggacctcttcttgtcccgcccacctgac
cccctgacctcctctctgacttga
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