Oncorhynchus mykiss (rainbow trout): 110507678
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Entry
110507678 CDS
T07259
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110507678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110507678
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110507678
Complex C
U5 SnRNP specific factors
110507678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110507678
NCBI-ProteinID:
XP_021443498
Ensembl:
ENSOMYG00000043443
UniProt:
A0A8C7UK37
LinkDB
All DBs
Position
27:18747195..18770034
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDCAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccatatagaggggtaccaggtggaatgcccccaggtatccatccc
ccagcccaggttccagactacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcaaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaggacatgccacctgagcacgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaaattccgtcacgacaagagggtatacctgggagctctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccctgggagcagatcagagacgtgcct
gtcctataccacatcactggagccatctccttcgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggac
cgtcgtcacttcaagcgtatgcgcttccctccttttgacgatgaggaacctcccctggac
tacgctgataacatcctggatgtggagccactggaggccatccagatggagctggatgca
gaagaggactcctccgtggctgagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccccgggggacct
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagatcatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gtgttcatcaagactgaggatcctgatttgccagcgttttactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaagag
tttgagcttccagagtacgtggagcccttcctgaaggagacacccctctacacagacaac
acagccaatggaatcgctctgctctgggcaccacgccccttcaacttgcgctctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcattgcccagcc
ggccagccagtgaaggtgcgggtgtcttaccagaaactgctcaagtactatgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgtttcgttcctttaaa
gccaccaagttcttccagtcaactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggatacaacatgctgaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacgaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagactgggcaacgtggatgctttccagttggcagacggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacaaatccggatgtgcaaggacctcaagcacctcatctactaccgcttcaac
actggtccagtgggtaagggtccaggctgtgggttctgggcaccaggatggagagtgtgg
ctgttctttatgaggggcatcacccctctgctggagagatggctgggcaacctgctggcc
aggcagtttgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgtgtg
gagtcccactttgacctggagctgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcctgg
cgctgctggaaggccaacatcccctggaaggtcccaggcctgcccacacccatcgagaac
atgatcctacgctacgtgaaggccaaagctgattggtggaccaacacagcccactacaac
cgcgagcgaattaggcgcggcgcaaccgtggacaagactgtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccacaacagtccactggctg
gagagcagacgcttctcccccatccccttccccccactgtcctacaaacacgacaccaaa
ctgctcatcctggctctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtctcagagagaggagttggggctgatagagcaggcctatgacaaccctcacgaggcc
ctgtccagaatcaaacggcacctgctcacacagagagccttcaaagaggttggcatagag
ttcatggacctgtacagtcacctggtgcctgtgtatgatgtggagcccctggagaagatc
acggatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactcctcgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgctg
gagtctcgctatgaaaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgactgccaagaacaatgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggctggaccccctcagatgcccaacgacttcctgtccttccaggataca
gccacagagagtgcccaccccatccgcctctactgcagatacatcgaccgcatacatatc
ttcttcaggttctcagctgatgaggccagggaccttatccagaggtacctaacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtgcaatgggagaacagctttgtgtcagtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggagtctggaacctgcag
aacgaggtgaccaaagagcgtactgcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtcagacagatcctcatggcctcaggatccaccacctttacc
aagattgtcaacaagtggaacacggctctgatagggctgatgacgtacttccgtgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaaatgtgagaacaagatccagaca
cgtatcaagatcggtctcaactccaagatgcccagtcgcttcccccctgtagtcttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tcggatctgaggtggtcaaaacagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgctacatccagccctgggagagt
gagttcatcgactcccagagagtttgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttagaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggtgctgaagcagaacccgttctggtggacccac
cagcgtcacgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacactcttcaaagggacttacttccccacc
tgggagggtctcttctgggagaaagccagtggctttgaggagtccatgaagtggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtcccccaccatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
accgggatcttcatgcacggaaagatccccaccctgaaaatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagcgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagatcgagacagtgcagaaagagaccattcaccccagg
aagtcctacaagatgaactcttcctgcgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctccctgctcgctgactcaaaggatgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactatgactctcacgacatcgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgaccttgcctacaacctccacagtgggtacggtaac
tggttcccgggaggcaagcccctgatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcagctctactcctcagag
cccactgagccctacctgtcctcccagaactacggcgagctcttctccaatcagatcatt
tggtttgtggacgacactaacgtataccgtgtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaacggagcaatcttcatcttcaaccccaggacaggccagctc
ttcctcaagatcatccacacctctgtgtgggccggacagaaacgtctgggacagctggcg
aagtggaagacagctgaggaggtggctgctctgattcgttcccttcctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgttggaccccctcgaggtccacttgctg
gacttccccaacattgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctgttc
aacctgtatgacgactggctcaagaccatctcctcctacaccgcgttctcccgtctcatc
ctgatcctgagggcgctccatgtgaacaacgactgtgccaaggtgatcctgaagcccgat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgatgaggagtggatc
aaggtggaggtgcagctcaaagacctcatcctggccgactatggaaagaagaacaacgtg
aacgtggcatctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagattgctgagattgagaagcagaccaaggagcagtcc
cagctcactgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctccaactatgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatcaggtgtattgtcatggtaccccagtggggaacgcatcagaccgtc
cacctacccaatcagctgccaggacacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaatgagtctccccaactctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggatggagagaagaccatcatcatcacctgcagt
ttcactcccggctcctgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgatcgcttcctgggcttcttcatggtgcctggacaggtc
tcctggaactacaacttcatgggtgttcgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcggccctctcacttcctcaacttt
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtatggttga
DBGET
integrated database retrieval system
