Oncorhynchus mykiss (rainbow trout): 110507680
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Entry
110507680 CDS
T07259
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110507680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110507680
Membrane trafficking [BR:
omy04131
]
Endocytosis
Phagocytosis
Scavenger receptors
110507680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
110507680
NCBI-ProteinID:
XP_036821711
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Position
27:18789552..18796852
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AA seq
949 aa
AA seq
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MGQFLTGLGLLLCCSLSSPQRLAPSGRNVCQDPRNPSTLVCCTGWRHQREECTLPVCDGE
QACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCRELCKCHPHGRCDPITGKCTC
LSNRWGPLCQNTCKCGRHGHCHPVHGNCTCDEGWWTPTCAKQCQCYPGTSTCDPLTGRCQ
CAPGYWGQKCSLRCSCYTSSCQQKTGACECQNGWWGPTCDRHCNCDLEHSECNAVSGECV
CQPGYKGAFCNEPCGPGEYGSGCTLSCGHCEGGQSCSVVDGVCTACEPGWNGTHCDRLCP
HGYHGNYCQEACPRCRNGEPCDPRTGACSRCDPGWTEPRCDEPCSNRTFGDACRSLCSPC
FHGHCDHVTGSCVCGPGFQGRSCNITCPDQLYGFNCSSVCDCGEGTACHPATGACPYSGH
RALITGFLVPLLLVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSFFDSDEETGEVLYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSISAEDMSLPFGIPRTSSNAKSKCPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKHKSPWGVLMLSALQAQGGNASEGEETEGGVDGCG
GGTGPLEDPESSGEAGDPDVDRWTATPTRAMSTLQVPGAVVGRTISNAAVPRKGGQTPGS
TSDGQQAEMDKVTTVYVTVGKAGVGRPLSKLELPSLEGPVQAMLRRLGSLQRHKDQEVGT
KPKGKSPGTEGITKPPRRKLGTRSSVWEQGAPPPSGVEGAVGEGVSMRKPSRRKQHAHHS
SPAVMGNTDTNTQPLPEDSPATVTPTRPLSSILKSVPEVAGSKVRGERSGVRRENGDPGM
QTDSGYRTIGPAGFVTDTVSLSEVITNEGVVAGVDDGPNLYENVMIMHS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggccagtttctgacgggtctaggactactgctctgctgttccctctcctcccctcag
agactggctccctcagggagaaacgtctgccaggaccccaggaatccttccactcttgtc
tgttgcactggatggagacatcagagagaggagtgtactttacctgtgtgtgatggtgag
caggcctgccagcaggatgaggtgtgtgtatacccgggcgtctgtcgctgtcggcctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggccccggactgccgt
gagctgtgcaagtgccaccctcacgggcgctgtgacccgatcacgggcaagtgtacgtgc
ctttccaaccgctgggggccactctgccagaacacctgcaaatgtggccgtcatggacac
tgccaccctgtacacggcaactgcacctgcgacgagggctggtggacacccacctgtgcc
aaacagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgccccgggttactggggtcagaagtgcagtcttcgatgtagctgctacacatcatcc
tgccaacagaagacgggggcgtgtgagtgccagaacggatggtggggtccgacgtgtgac
cgccactgtaactgtgacctggagcacagcgagtgtaatgccgtcagcggggagtgtgta
tgtcagcctgggtacaagggagccttctgtaacgagccgtgtggacctggggagtatggc
agcgggtgtacactgagctgtggccactgtgaaggaggccagtcgtgctctgtggttgat
ggtgtctgtacggcctgtgagcctgggtggaatggcacacactgtgaccggctgtgcccg
catggttaccatggaaactactgccaggaggcgtgcccacgctgcaggaacggtgaacca
tgtgaccccaggacgggggcgtgttcacgatgtgacccaggatggaccgaacccaggtgt
gacgagccatgctctaacaggacattcggggacgcctgccgctccctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcctgggttccaggga
cggagttgtaacatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggagagggaaccgcctgtcacccagcaacgggggcgtgtccatacagtggtcac
agggctctgatcactggtttcctggtccctctgctcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcacaccacgac
cctgagctgacgttcaaccacagcttcatagagcctccctcctcaggctgggtgacggag
ggatccttcttcgacagtgatgaggagaccggagaggtgctctactgtgtcccccccaga
gaagacatccctgcagttgcaggcggtgagttccaggagttccagcacgagatgagttct
aagtgtaatatgttccccgacccctctgccttcagtattagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaatgcccctccgtctccttc
gccgaaggcaccaggttcagtcccaaggagcgccgaggctctgcccaagatttgacaccc
ggggccccccgcaccaaacacaagtccccctggggggtcctgatgctgtcagccctccag
gcccagggagggaatgcctcagagggagaagagacggaggggggggtggatggatgtgga
ggtgggactggaccattggaagacccagaatccagtggtgaagcaggggaccccgatgtg
gacaggtggacagctaccccgacccgagccatgtctaccctgcaggtgcctggagcagtg
gtaggacgcaccatatccaacgctgctgttcccagaaagggagggcaaacaccagggtcc
acatcagatggccagcaggcagagatggacaaagtgaccacagtgtatgtgacagtgggg
aaggcgggggtggggaggcccctgtctaaactagagctccccagcttggagggcccggta
caggccatgctacgcaggctaggcagcctccagagacacaaagaccaggaggtgggaact
aagcccaaggggaagagcccggggacggaggggatcaccaagccccccaggaggaagctg
gggactaggtccagtgtgtgggagcagggggctcccccaccctcaggggtggagggtgct
gtaggggaaggcgtatctatgagaaaacccagtaggaggaaacagcacgcccaccatagc
tcccctgctgtcatgggaaacactgacactaacactcaacccctaccagaggacagccct
gccaccgttacgcccacgaggcccctgtcctccattttgaaaagcgtgccagaggtcgct
gggtcaaaggttaggggtgaaaggtcaggggtaaggcgagagaacggcgaccctgggatg
cagactgatagtggatatcgaacaatcgggccagctggatttgtaacggacactgttagt
ctgagtgaagtcatcacaaatgaaggagtggtggctggtgtggacgatggacctaacctt
tatgagaacgtgatgattatgcattcctaa
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