Oncorhynchus mykiss (rainbow trout): 110507841
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Entry
110507841 CDS
T07259
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142
Lysosome
omy04144
Endocytosis
omy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110507841
04142 Lysosome
110507841
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110507841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110507841
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110507841
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110507841
Exosome [BR:
omy04147
]
Exosomal proteins
Proteins found in most exosomes
110507841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
110507841
NCBI-ProteinID:
XP_021443870
Ensembl:
ENSOMYG00000047134
LinkDB
All DBs
Position
27:complement(24430610..24456967)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggctgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtc
aaagtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgcc
ggcttcgcccagttcaaaatggagggtaatacagaggaatcgacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggc
aatcagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctagccctgcgcatggccgtgcgcaacaacctggctggg
gccgaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgag
gctgccaaggtggccgcaaacgcgcccaagggtatcctgcgtaccccggacaccatccgt
aagttccagagtgtgccggcccagccaggccagacctctccactgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggggacctggtgaaatcagtggaccccactctggctctcagcgtctac
ctcagggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccag
aaaattgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctcagg
aatgtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggat
gaggagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctctttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaacctggtccacgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtca
gtggaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcact
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aatttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaatcccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctg
ccttggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgatcaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtg
ctgctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctg
tctgagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgt
gtgatggagtacatcaaccgcctagacaactacgatgcccccgacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacc
tccgccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgct
gagcgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggt
ctggtgaaggaggccatcgactcctacatcaaggctgatgacccctctgcctacatggag
gtgggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaac
aacgtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggcc
gccgtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatg
agccacccctcagatgcctggaaggagggacagttcaaagacattgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccgtatctgcggtcagtgcagaaccacaac
aacaagggtgtcaatgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccattgatgcctacgacaactttgacaacatcacccttgcccagggcctg
gagaagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcct
gacgtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctatggaggctacggctacccagcagcacccaccggctacggccaacctccccag
cctggctttggctatggcatgtga
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integrated database retrieval system
