Oncorhynchus mykiss (rainbow trout): 110508218
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Entry
110508218 CDS
T07259
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110508218
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110508218
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Meiosis-specific proteins
Others
110508218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110508218
NCBI-ProteinID:
XP_036822815
LinkDB
All DBs
Position
28:complement(31374369..31397685)
Genome browser
AA seq
1645 aa
AA seq
DB search
MLDSEECTLSLDNLFFERPVVHKVNPLCQEQNSWQLEPPPSLSQIPATQDIQKEAEDLSS
FSFSQRSKKFIPPLKRTVGSDGFIENNTDFKQITSDGGKEPEGQGGCALWSQEDFMNKSQ
CSTIVSRGRTETPQESGHALEQKHFPLDFSQSPPVRRSLFKPLIGQVVNSGADLNTRHSQ
TRPREQQTFNQVSMATEPRLARQSAAGPSPLSGLGPAAARGPPPHTPDKGTKRANVLPMT
PQPLQIQGTSGPGILRPVSEIHAKFRSVFKEFPYFNYVQSKALDDVLYTGKNVVACAPTG
SGKTVLFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKKKFEPLGLSCKELTG
DTEIDDFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDTTRGATLE
VVVSRMKAVHAFRAAENPQEDVSMRFVAVSATIPNIKDIADWLCDNRGPATCLEMDESHR
PVKLRKVVLGFPCSSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSAAVL
AKDARFIMRIEHKQRLMKYANSLLDSKLRDLVTFGVGFHHAGVDVSDRKVIEEAFTMGDL
PVLFTTSTLAMGVNLPAHLVVIKSTMHYIGGACKEYSDADMLQMIGRAGRPQFDTSATAV
IMTKTHTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNMALDWIRSTFLYIR
ALKNPKHYGFSTDLDRCGIEAKLQELCLKNLNSLASIGLVSMDEDVNIKATEAGRLMARY
CVAFDTMKQFSKVTGTETLPELIELMAKGREFADVQLRVNEKRTLNTLNKDKNRITIRYP
MEGKIKNNEMKVNCLIQAQFGSIPIQEFGLTQDTGRIFRNGVRISRCLAEFLNQRSKTGF
SALLNSLILAKCFSAKLWENSPYVSKQLEKIGLTLSAAMVNAGLTTFSKIEKTNARELEL
IVNRHPPFGNQIREAIINLPKYEVCLEQLPRYNVATAEIVVTVNVKNHEQLLSKRTAPDH
HYVTMIIGDCDNNVVFLQKLTDLMLLKSGSWSKKIEVAKASKGEEINVNLVSSEYVGLDI
QQKFSPFFSGPKRYGAESLAPEQHNTVQQAQANAQRSQGATQRTQPTAQQTQKRNSTSTC
ATEKDSSQSDPGKRQCNHLCKNKDQCGHDCCKNGGPGVLKRQMNQHSSFTSYLQDLKTRS
DTLTETPVKRLKMRMNGGMGAANMQQFSYSPKPILPASSRYEGNQYGALARPQSVDSAED
FATHQEMAYVVTYGHEYNDYLEDISQTTGDLKPPPVQLQILTESQSTSIWRKPNAYDGRS
LSHSTPQSTPQSQSRSYPQSHSTPQSQSRGYPQSHSTPQSQSRSYPQSHSTPQSQSRGYP
QSHSTPQSRGYSQSISQSQSRCYPQSHCTPQSRSYPQSHSTPQSQCRSYPLSQSTAQTQS
RGNSTPQNQSRSFSQSSIVDLTDDSGFFSSSITPSVTFDLGDEWDDFDDDNLVHANEKPC
TTVAKTKGVDLDCDRPKGNSTPLPSISLLPKPRFTTSNSPLRSTSPVVSQIPVTTLPVRP
HNSQATASWSHSDNKATRTFSEPPMKAPPPFPKQTDTSFPPLGERFDFFSKTTIPNNDNV
TGKRLQGEDYSKEVEAFMGIFDGLF
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagagtgtactttgtccctggataacttgttctttgagaggccagtt
gtccacaaagtaaatccactttgtcaagagcagaattcttggcagttggaaccccctcca
tccctctcccagattccagccactcaggacatccaaaaagaggcagaggatctttcatca
ttcagtttctctcagaggtccaagaaattcattccccctttgaaaagaacagtcggcagt
gatggtttcatagaaaataacacagattttaaacaaattaccagtgatggaggaaaagaa
cctgagggccagggcgggtgtgctctctggtctcaggaagacttcatgaacaagtcccag
tgttccacaatagtcagcagaggtcgaactgaaaccccacaggagtctggtcatgcgctg
gagcagaaacattttcctctggacttcagccaaagcccacctgtacggagaagtttgttc
aaacctctcattggtcaggtggtgaacagtggtgcagacctgaacacccgccacagccag
acaagacccagagagcagcaaaccttcaaccaggtttccatggcgacagagcctcgactg
gcaagacagtcagcagcaggccccagccccctcagcgggctgggtccggctgcagcccgg
ggacccccaccgcatacaccggacaagggcaccaagagggctaacgtcctccccatgaca
ccccagccccttcagatacaaggtacttctgggcctgggatactccgaccagtctctgaa
atccatgcaaaattcagatctgtcttcaaagagttcccttacttcaactacgtccaatcc
aaagccctggacgatgttctttacacaggaaagaacgttgtggcttgtgctcccactggt
tctggtaaaacagtgctctttgagttggccatcatccgcctactgatggaaaccacagag
ccctggagaaacgtcaaagctgtttatatggcccccatcaaagctctatgcagccagcgc
tttgaggactggaagaagaaattcgagcctctgggcctgagctgcaaggagctgaccgga
gacacagagatcgacgacttctttgagattcaggacgcccatatcatcatgaccacacct
gaaaaatgggacagcatgaccaggaagtggagggataactgcctgctgcagttggtccgg
cttttccttattgacgaggtgcacgtggtgaaagacactacgcgtggagcgacactagag
gtggtggtgagcaggatgaaggcggtccatgccttccgtgcagcagagaacccccaggag
gacgtctccatgagatttgtggctgtctccgccaccatccccaatatcaaggatatagca
gactggctgtgtgacaacagaggccctgctacttgtctggagatggatgagagtcacaga
cctgtgaaactgaggaaggtagtgctgggtttcccctgcagcagcaaccagactgagttc
aagttcgacctgtcactcaactacaagatggccaacatcatccagacctactcggaccag
aaaccaacccttgttttttgctcaacaaggaaaggagtccagcagtcagccgctgttctg
gccaaggatgccaggttcatcatgaggattgagcataaacaacggttgatgaagtatgca
aactctctcctggactcaaaactcagagacctggtgacgtttggggttggtttccaccac
gccggggtagacgtgtccgacaggaaggtgattgaagaggccttcaccatgggagacctg
cctgtactgtttacaaccagtactctggcgatgggggtgaacctgccagcccacctggtg
gtgatcaagtccaccatgcactacatcgggggagcctgcaaggagtacagcgacgccgac
atgctgcagatgattggccgagcaggccggccacagtttgatacgtcagcaaccgcagtg
atcatgaccaagactcacaccaaagacaagtacatgcagttcatgaatggggcagaaatt
attgagagcagtctgcacacccaccttgtggagcacctgaacgctgagatcgtcctccac
accatctcagacgtcaacatggccctggactggatccgctccaccttcctctacatcaga
gcactgaagaaccccaaacactatggtttttccaccgacttggaccgatgtgggattgaa
gccaaattgcaagagctctgtctgaagaacctgaactccctggcctccattggtctggtc
tccatggatgaggatgtcaacatcaaagctacagaggcaggcaggttgatggccaggtac
tgtgtggcatttgacaccatgaagcagttcagcaaggtgactggcactgagaccttacct
gagctgatagaattgatggcgaagggcagagagttcgctgacgtgcagctgagagtgaac
gagaagagaaccctgaacacgttgaacaaggacaagaacaggatcaccatcaggtatccc
atggaggggaagatcaaaaacaatgagatgaaggtgaactgcttgattcaggcccagttt
ggctccattccaattcaagagtttggactcacacaagacaccggtagaatcttccggaat
ggagtccgaatcagcagatgtttggcagagtttctaaaccagcgctccaagacaggcttc
tctgctctgctcaactccctgatactggccaagtgcttcagtgccaagctgtgggagaac
tctccttatgtctcaaagcagctggagaaaatagggttgactctttcagccgccatggtg
aacgctgggctcaccaccttcagtaagatagagaagaccaacgccagggaactggagctg
atcgtcaacagacatcctccattcggaaaccaaatcagagaggctatcatcaatctaccc
aagtatgaagtttgtttggagcagcttccaagatacaacgtcgccaccgcagagattgtc
gtgactgtgaacgtgaagaaccacgaacagctgctgtcaaagagaactgctcctgaccac
cactatgtcaccatgatcatcggggactgtgacaacaacgtggtcttcctgcaaaaactc
acagacttgatgctgttaaagtcgggaagctggtcaaagaagatcgaagtggcgaaagcc
tccaaaggagaggagatcaatgtgaatctggtcagctcagaatacgtggggttggacatt
caacagaagtttagtcccttcttctctggaccgaagaggtacggagctgaatcactcgca
cctgagcaacataacaccgtgcagcaagcacaggctaatgctcagagatcacagggtgca
acacagagaacacagccaacagctcagcaaacacagaagagaaactccacatccacatgt
gctacagaaaaggattcctcacaatcagatccaggcaaaagacaatgtaaccacttatgc
aaaaacaaggatcaatgtggccacgactgctgtaaaaatggagggccgggggttctgaaa
aggcagatgaatcagcattcgagtttcacctcctacctccaagacctgaagactaggagt
gacacactgacggagacaccagtcaaacgcctcaagatgagaatgaatggcgggatggga
gctgccaacatgcaacagttctcttattcacctaagccaatcctacctgcttcttctagg
tatgaaggtaaccagtatggcgctttagcaagaccacagagtgtagattcagctgaggac
tttgcaacacaccaagagatggcttatgttgtgacctatggccatgagtataatgactac
ctggaagacatatctcagacaacgggagatttgaaaccaccacctgttcaacttcagatc
cttacggagtcacaaagcacttcgatatggaggaagcccaatgcctacgatggaagatcc
ctcagccacagcaccccccaaagcaccccgcaaagccagagcaggagttaccctcagagc
catagcaccccccagagccagagcaggggttaccctcagagccacagcaccccccagagc
cagagcaggagttaccctcagagccacagcaccccccagagccagagcaggggttaccct
cagagtcacagcacaccccaaagcaggggttactcccaaagtatctctcagagccagagc
agatgttacccacagagtcactgcaccccccaaagcaggagttaccctcagagccacagc
accccccagagccagtgcaggagttaccctctgagtcaaagcaccgcccaaacccagagc
aggggtaacagtaccccccaaaaccagagcaggtctttttctcagagttccattgtagac
ttgaccgacgacagtggtttcttctcatcgtcaatcacccccagcgtgacctttgacctg
ggagacgagtgggacgattttgacgatgacaacttggtgcacgccaacgagaagccatgc
accactgttgctaaaactaaaggggtggacctggactgtgataggccaaaaggaaactcc
acaccactaccatccatttccttactgcccaaaccccgcttcactacatccaattcccca
ctcaggtcgacctccccagttgtttctcagataccagttactactctcccagtcagacca
cacaactcccaggctactgctagctggagccactctgacaacaaggccacaaggacattc
agtgaaccccccatgaaagcaccaccccccttcccaaaacagactgacactagctttccc
cccctgggagaacggtttgatttcttctcaaagacgactatcccaaacaatgacaatgtg
actggcaaaaggctccagggagaggattacagcaaggaagtggaggcattcatggggata
tttgatggactattttag
DBGET
integrated database retrieval system
