Oncorhynchus mykiss (rainbow trout): 110508482
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Entry
110508482 CDS
T07259
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110508482 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
110508482 (acin1a)
03015 mRNA surveillance pathway
110508482 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110508482 (acin1a)
03041 Spliceosome [BR:
omy03041
]
110508482 (acin1a)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110508482 (acin1a)
Spliceosome [BR:
omy03041
]
Complex C
Other components
EJC/TREX
110508482 (acin1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
Motif
Other DBs
NCBI-GeneID:
110508482
NCBI-ProteinID:
XP_036821857
UniProt:
A0A8C7U9B1
LinkDB
All DBs
Position
28:10111046..10157285
Genome browser
AA seq
2038 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAVEDDDTDQEDHTQGNNSSA
CAVPDQDDVPVLVDQHKPLGPSEGEGLAGPASEGEGHRAKDGHVSGPPASTSPTSAPTAV
ASLSVCVADGEQRPERVPTSSQVPADSDDDSDGGDEDGEDEDWDSGARRRDLGEPPRGQL
ARERSEGSRQPPQHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHGRGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFTSLVPVTNQGVIGGHLSHSQVPVSVLR
PTIMDERDSAWQQENKERELQAESEREKALEQERLRAVELERQRIFEQQRAMEQERERAL
EREREEREKALEVERKERERALERERAQALEQEREEREKALAEEREKSVARERALELEKA
VELERQRAMEREQALQQEREERERAKAFEREERERALEREQVLEQEKVETARALEQERVE
MEKALERERQERERALEREQLERERALEREQLEREKALETERLEREKALEQERVEKEKAL
ELVRQKALKREQEERQKALELERQKALELERQEALELERQEALELERQKALELERQEALE
LERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQ
KALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALE
LERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQ
KALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALE
LERQTALELERQTALELERQTALEQERQTALELERQTALELERQTALELERQTALELERQ
TALELERQTALVREQEREKALELERQKALERELEEREKDREEKARALHQERIEREKERAM
ERGKALEREREEKERALEQKALQREKEERESVLEQDKERAMVAERESHLPPWKRGREIGL
TPLPTPPLSTGAGRMAATEEGGEPHVPSLPQTASRDNQPVESGRPLSPTIATPLSPQSSF
KKFRFLRDPPVLSPSCSASLVIKRPRTFSDSPHTQASALQSPRKPGEQEQESTLQGSKLS
SGQAASQMPARQGFLVSGPTAADTTGPETPVIATLGKSPEEEKAKELVSEEHVLADKETN
KQEVGEIARGAKRVDAGNVPSGPAESVVPPSPPPEEGNVDRGRERGQKKQEKQGRRASSS
SDSSDSDSGSSSSSSSGSSSSSQGKTRTTPSGRKPEKPQTKTISQDKETVSQLEESKESP
KAPQRKNRVPGVKDMTIDGARHGKKSFVGIPAGQDNEQKDSEGEEEITDTTREVKEAAMA
EPERAPESSEESLTPKAFTARRISLSSSKASPGVVSAEGEAESAAGPGRKRRWGSSTAVT
AKKPSISITTDSLKSLIPDIRLSPGQEAVVDLHPEEAHLSGGEEDREQGEQDFKIRRTVT
QVVLSETQENGPKESKRSENMEDREDGVEVKSDREEKMDDSFQRDSMETQSPSPPIHDME
MNTVTPSDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKVSNIVHLSNLVRPFTLGQ
LKELLSRTGTMLEDGFWIDKIKSHCYVTYSSAEEAVATRAALHGVKWPQSNPKFLCVDFS
QQEELDFHRGLPRPGGAGEEERGASSVPGRGRGAALPPLLPERDQWAEREREMERRERTR
AEREWDRDKVRDFGPGKPGEDAGPRRSRSRERKRKERKTDKKEKAAEEAPAKLLDDLFNK
TKAAPCIYWLPLTEEQFTQREVARQERRKEREKRRKEQQEEEEKKREEERKERIKASGER
GEGDRDRERDRERGKDRDRDREGDKHRESSHRRPGGNSAGVGRRSRSRSDPPPRDRRR
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacactggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttggaggagcgggggcttcctaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaatagcttcattaag
cagtatctggcaaaacagcaggagctcttgaggcagcgtcttgagaaagaggcccgggaa
gcagtcgaagatgatgatacagaccaagaggaccacacacagggcaataacagctctgcc
tgtgctgtcccagaccaggatgacgtacccgtgttggttgaccagcacaagccacttggc
ccctccgagggagagggactagcaggccccgcaagcgagggagagggacacagggccaaa
gacggccatgtgtctggtccacctgcctctacctctcctacctctgcccctactgccgtt
gcttctctgtctgtgtgtgtagctgatggtgagcagcgaccggagagagtcccaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggcgaggat
gaggactgggatagcggtgccaggaggagggatctaggagagccaccaagaggccagcta
gcaagagagaggtctgaaggatcccgccaacccccacagcacatcccccccctgttgtct
ccgcagcttcgacagcctacccctcccccctcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacctccagctctggctcctctagcagtggcagtcgtagtagtagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggcgccttctctggagttgggtggcatggacgtggggaggcagaaaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttcaccagtctggttccagttacc
aaccagggtgtcattggaggccatctatcccacagtcaagttcctgtgagtgtgcttagg
cccactataatggatgagagagattctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagcgaaagagaaaaggcccttgagcaagagagacttagagccgtggagctg
gaaagacagagaatatttgagcaacagcgtgccatggagcaagagagggaaagagctttg
gagcgagagagggaggagagggagaaagccttggaggtagaaaggaaggagagggaaaga
gctttagagcgagagagggcacaagctcttgaacaagagcgggaggaaagagagaaagct
ttggcagaagagagagagaagtctgtggcaagagagagggcccttgagcttgagaaagct
gtggagttagaaaggcagagagccatggaacgagagcaagctttgcagcaagagagagag
gagagggaaagagctaaagcttttgagcgggaggagagggaaagggctcttgagcgggag
caagttcttgaacaagaaaaggtggagacagcgagagcgttggagcaagaaagggtggag
atggagaaagccttggagagagagagacaggaaagagagagagccttggagcgagaacag
ttggagagggagagagccttggagcgagaacagttggagagggagaaagcattggagacg
gagcgtctagagagggaaaaggctttggagcaagagcgagttgagaaggagaaagctttg
gagctagttaggcagaaagctttgaagcgggaacaggaggagaggcagaaagcgctggag
ctagagaggcagaaagcgctggagctagagaggcaggaagcgctggagctagagaggcag
gaagcgctggagctagagaggcagaaagcgctggagctagagaggcaggaagcgcttgag
ctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcag
aaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggag
ctagagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcag
aaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggag
ctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcag
aaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggag
ctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcag
aaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggag
ctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcag
aaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggag
ctggagaggcagaaagcgctggagctggagaggcagaaagcgctggagctggagaggcag
aaagcgctggagctggagaggcagaaagcgctggagctggagaggcagaaagcgctggag
ctggagaggcagacagcgctggagctggagaggcagacagcgctggagctggagaggcag
acagcgctggagcaggagaggcagacagcgctggagctggagaggcagacagcgctggag
ctggagaggcagacagcgctggagctagagaggcagacagcgctggagctagagaggcag
acagcgctggagctagagaggcagacagcgctggtgcgggaacaggagagggagaaagcg
ctggagctagagaggcagaaagcattagagcgggaactggaggagagggagaaagatagg
gaggagaaggcaagggctttgcaccaagaaagaattgaaagggagaaagaaagagccatg
gagaggggaaaagctttggaacgtgagagagaggagaaggagagggctttagaacagaag
gccctgcagagagaaaaagaagagagggagagtgttttggaacaagataaggaaagggct
atggtggctgagagggagagtcatcttcctccatggaaacgtggtcgtgagattggtctt
acccccctgcccactcctcccctctccacaggagcaggtagaatggcggcaacagaggag
ggtggggagccccacgtgccatccctaccccaaacagcatcgagagacaaccagccagtt
gaatctggtaggcccctgtcaccaactatagcaacgcctctgtcaccccagtcctccttc
aagaagttccgtttcttgagagaccccccagttctgtccccatcttgttctgcatccctg
gtcatcaagaggccccgtacattctctgacagcccccatactcaggcctccgctctccag
tccccaagaaaacctggggaacaagagcaggaaagtactctgcaggggtccaagctttct
tctggacaggcagcatcacagatgcctgcaagacaggggttccttgtttctggaccaact
gcagcagacacgacagggccagagaccccagtgattgccacactaggcaagagtcctgaa
gaagaaaaggctaaggagctcgtgtcagaggagcatgtcctagcagataaggagacaaac
aaacaggaagtgggagagatagccagaggtgctaaacgggtggatgcaggaaacgtcccc
tcgggtccagcagaatctgtggtaccaccctcacccccaccggaagagggcaatgtagac
cggggaagggagagaggtcaaaagaaacaagagaagcagggaagacgagcttcctcatct
agtgactcctcagattctgactctgggtcatcctcctcaagctcgtctggttcatcttcg
tcctcccagggcaaaactcgcaccactcccagtggtagaaagcctgagaaacctcagaca
aaaaccatatcccaggataaagagacagttagtcaacttgaggagtcaaaggagtcccca
aaagcaccccagcgcaaaaatcgagtacctggggtgaaggacatgaccatcgatggagcc
agacacggcaagaaatcgtttgttggaatacctgctggacaagacaatgagcagaaggac
agcgagggagaggaggaaataacagacactacaagggaggtgaaggaggctgccatggct
gagcctgagcgggctcctgagagcagtgaggagagtctgacgccaaaggcattcacagcc
cgtaggatctccctgagcagcagcaaggcctctccaggtgtcgtcagtgcagagggcgag
gcagagtctgcggccggccccgggaggaagaggaggtggggttccagcactgcggtcaca
gccaagaaaccatccatcagcatcaccacagactctctgaagtctctgatcccagacatc
aggctgagtccaggacaggaggcggtggtggatctgcacccagaggaagctcacctctct
gggggagaggaggacagggagcagggcgagcaagacttcaagatcagacgcacggtcaca
caggtggtcctgtccgagacccaggagaatggaccgaaggagtccaagaggagtgagaac
atggaggacagagaggatggagtggaggttaaaagcgacagagaggagaagatggacgac
tcattccagagagactccatggagacacaatccccctctccccccatccatgacatggag
atgaacacagtgaccccaagtgacaccctgatccgtcgctccatcagccagcagaagtct
ggcgtgtccatcaccatagacgaccctgtccgcacggccaagcagccctctcctccacga
ggcaaagtgtccaacatcgtccacctgtccaacctggttcggccgttcacactgggtcag
ctgaaggagctgctcagcaggactggcaccatgctggaggacggcttctggatcgacaag
atcaaatctcactgctacgtcacctactccagtgcagaggaggcagtggccactcgtgca
gcactacatggggtgaaatggcctcagagcaaccccaagttcctctgtgtggacttcagt
cagcaagaggagcttgacttccacagaggcttgccacgccctgggggggctggagaggag
gagaggggggcttcatcggtgcctggccgaggtcggggggcggccctgccccctctcctg
cccgagcgtgaccagtgggcagagcgagagcgtgagatggagcgcagggagaggacccgg
gcggagagggagtgggacagggacaaggtccgggactttggtcccggaaaacctggagag
gatgcgggccccagacgatcgcgctccagagagaggaagcgcaaggagaggaagacggac
aagaaagagaaagctgcagaggaagcccctgccaaactgctggatgacctgttcaataaa
accaaagcagccccttgtatatactggctccccctcacagaagagcagtttacacagagg
gaagtagctcgacaagagaggaggaaggagcgggagaagaggaggaaggagcagcaagag
gaggaggagaagaaaagggaggaagagcgcaaagaaaggataaaagcatctggcgaaaga
ggcgagggggacagggacagagagcgagacagggaaaggggcaaagacagggaccgagac
agagagggtgacaaacacagagaaagcagccaccgcagaccagggggcaacagtgcaggg
gtgggcagacgctctcgcagccgcagtgatcctccacctcgtgacagacgacgctag
DBGET
integrated database retrieval system
