KEGG   Oncorhynchus mykiss (rainbow trout): 110508503
Entry
110508503         CDS       T07259                                 
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:omy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:omy04131]
    110508503
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:omy04147]
    110508503
Membrane trafficking [BR:omy04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    110508503
Exosome [BR:omy04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110508503
  Exosomal proteins of bladder cancer cells
   110508503
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 110508503
NCBI-ProteinID: XP_021444737
Ensembl: ENSOMYG00000044456
UniProt: A0A8C7US42
LinkDB
Position
28:10564205..10588319
AA seq 1223 aa
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVETE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFSSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCSIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERGCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDP
EKDTVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADMDVDAP
GGEGWGEDAELQLDEDGFMDAQDGLGEEGGATKEEGGGWEVEEDLDLPPELELPAGAGGG
AEDGFFVPPTKGMSPTQLWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVQFGPYKQLFMQ
TLSRGRTCYLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTAGR
FEEAVERFRTILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQ
KRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLKNFKTAASFARRLLELGPKPEVAQQT
RKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPPYKGQVC
RVTQVTEIGKDVIGLRVSPLQFR
NT seq 3672 nt   +upstreamnt  +downstreamnt
atgttgaccaaattcgagacgaagtcggcccgtgtgaaagggctgagtttccaccctaag
cggccctggatccttgctagtcttcacaatggagtcatccagctgtgggactatcgaatg
tgcacactgattgacaagttcgatgaacatgatggccctgtcagaggaattgatttccac
aagcagcagcctctttttgtgtctggaggtgatgactacaaaatcaaggtgtggaactac
aagctgcggcgttgcctcttcactcttcttggacacctggactacatccgcaccaccttc
ttccatcatgactatccctggattctgagtgcctcagatgaccagaccatccgcatctgg
aactggcagtccaggacatgcgtgtgtgtcctgacagggcataatcactatgtgatgtgt
gctcagttccacccatctgaggacctggtggtgtcggctagcctggaccagactgtgcgc
gtgtgggatatctctggtctgaggaagaagaacctctctcccagtgccgtggagactgag
gtgcgaggcatctctggcgtcgatttgttcggcgcttccgatgccgtcgtcaaacacgtg
ctcgagggtcacgaccgtggggtcaactgggccgccttccatcccagcatgcctctcatc
gtctcaggggctgacgaccggcaggtcaagatctggaggatgaacgagtccaaggcatgg
gagctggacacctgcaggggccactacaacaacgtgtcctgtgctgtcttccacccccgc
caggagctcatcctttccaactccgaggacaagagcatccgtgtgtgggacatgtccaag
aggactggcgtccagaccttccgcagggaccacgaccgcttctgggtgctgggcgctcac
cccaacctcaacctatttgctgccggtcatgacagtggtatgctggtttttaagctggag
cgtgagcgtccggcctacgctgtgtacggaaacatgctctactacgtcaaggaccgcttc
ctgcgacagctcgacttcagcagcagcaaggacactgccgtcatgcagctccgcagtggg
tcaaagttcccagtgttcagcatgtcttacaaccccgcagagaatgctgtcctgctctgc
actagggcaactaacctggagaacagcacctatgacttgtactccatccccaaagagagc
gactctcagaatccagatgctcctgaggggaaaaggtcctctggtctgaccgcagtctgg
gtcgccaggaaccggttcgctgttctggaccgcatgcactcgctgctgatcaagaacctg
aagaatgagattgtgaagaaggtacaggtacctagctgcgaggagatcttctatgccggg
acaggctcactgctgctgcgcgacgcagacggagtcaccctctttgacgtgcagcagaaa
cgctcgctggccaccgtgaagatcgccaaggtcaagtatgtggtctggagcgccgacacc
agccacgtggccctgctggctaaacacgccattatgatctgcaacaggaagctggagagt
ctttgcagcatccatgagaacatccgtgtgaagagtggagcctgggacgagagtggagtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcatggtatc
atccggactctggatctgcccatctacgtgacccgggtcagaggcaacagtgtctattgt
cttgaccgtgagtgcaggccccgcgtgttgaacattgaccccacggagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgaggaggtgctgcacatggtgcgtaacgccaagctg
gttggccagtccatcatcgcctacctgcagaagaagggctatccggaggtggccctgcac
ttcgtcaaggatgaaaagacccgcttcagtctggctttggagtgtggaaacattgaggtg
gcgttggaggctgccaaggctctggatgagaggggctgctgggagcggctgggcgaggcg
gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccaaaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctacgcaagatgatg
aagatagctgagatcagaaaggacatgagtggacactaccagggtgctctgtatctgggg
gacgtcagcgagagagtccgtatcctgaagaactgtggccagaagtcactggcatatctg
actgctgccacccacgggatggacgaagaagcggaagccctgaaagagacctttgaccca
gaaaaggacactgtccctgaggtggaccccaatgcccagctgctgcagccgccacctccc
atcaaccccctggataccaactggcccctgctcactgtgtccaagggcttcttcgaggga
gccattgcagccaaggggaaggctggtcagatggctgcagacatggatgttgatgcccca
ggaggagagggctggggagaggacgcagagcttcagctggatgaggatggtttcatggat
gcccaggatggattaggggaggaaggaggtgccacgaaggaggagggaggaggctgggag
gtagaggaggatctggacctgcctccagagctggagttgccagctggtgccggaggaggt
gctgaagatggtttctttgtccctcctaccaagggcatgagccccacccagctgtggtgc
aacaactcccagctccctgtggaccacgtcctggctggttcctttgagaccgccatgagg
ttgctccatgaccaggttggagtggtgcagttcgggccctataagcagctgttcatgcag
actctatcccgcgggaggacatgctacctgggcctgccgtctctgccctgcctgcgtggt
aacccgcagaggaactggaaagactgtggggccaagcaggggctgcccgctgtgggtctt
cgtctctcagatctcattgcccgcctgcagcagtgctaccagctcaccactgccggccgc
ttcgaggaggccgttgaacgcttccgcaccatcctgctgtctgtgccactgctggtggtc
gacaacaagcaggagatcgcagaggctcagcagctgatcacaatctgcagagaatacatt
gttggcctcaccatggaaacggaaaggaaaaagttgcctaaagacacattggaccagcag
aagaggctgtgtgagatggcagcttacttcacccactgcagtctccagccagtccacatg
gtccttgtcttacgtacagcactaaatctattctttaaactgaagaacttcaaaacagct
gccagttttgcccgtcgtctgcttgaactaggacccaaaccagaggtggcacagcagaca
cgcaagatcttggcagcatgcgagaagacgctaaccgatgcccaccagctgaactacgac
ccccacaatccatttgacctgtgcgctgcctcgtacacgcccctgtaccgtggacgccca
gtggagaagtgccccctctctggggcctgctattgccccccctacaagggccaggtctgc
agggtcacacaggtgactgagatcggaaaggatgtgattggtctgcgtgtcagccctctg
cagtttcgttag

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