Oncorhynchus mykiss (rainbow trout): 110508656
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Entry
110508656 CDS
T07259
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110508656 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110508656 (cnot3a)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110508656 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110508656 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110508656
NCBI-ProteinID:
XP_036824263
Ensembl:
ENSOMYG00000001571
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All DBs
Position
3:10005877..10018441
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AA seq
959 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDRDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSLVSMAAVVG
GNPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTAP
SLPTPTTPISASPNSLPQVSPGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSAS
LNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSLESSSIPTSCSSGVTTNGAGTGLG
LLGSSPAHGSLTGGILGLVPGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGV
VGSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNG
PSLINSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQ
APEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGS
SAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERI
RQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaacttcaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcactggtggccacctctccaacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagg
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcctcctctcttgtctccatggccgccgttgtcgga
ggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtacaa
caacatcagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaacaa
ccccaaacaaaaccttgcacccccagcccacccagccacccccttctctccaccgccccc
tctctccccacacccaccacacccatctcagcctccccaaactccctgccccaggtctcg
cctggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatg
acggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctct
ctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagcc
gcgttgggaggcctgggtctgagtaccactacccagtccagtgtctcactggagagctcc
tccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggc
ctgctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcct
gggcagagtgtgatccctgggccccctctgatccctctcagccctgttggtgctgcccct
gggggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagta
gttgggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcaca
agttacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaa
tcacagagcagccagccttcctcgctgacctcctcagccagtcagcctatggacaacggt
cccagcctcatcaactccatcaccttgccccccagctctccgtccccctcgttttccgac
agtatccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgag
ggcctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcag
gccccagagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgt
caggccccggagcctctgagttctctgaaggcaatggctgagagagcagcattaggatca
ggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcg
tcagctgcccccggcacgcccgcagccccccagccctccctgtcggaggtgagcatcccc
ccttccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccaa
cagaccatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatc
aggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccc
caccactcagactctatagagttctaccagagactgtccacagagacgctcttcttcatc
ttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcag
tcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagact
atcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcag
aggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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