Oncorhynchus mykiss (rainbow trout): 110508743
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Entry
110508743 CDS
T07259
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04115
p53 signaling pathway
omy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110508743 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
110508743 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110508743 (cop1)
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110508743 (cop1)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110508743 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110508743 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
zf-RING_UBOX
Beta-prop_DCAF4
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
WDR90_beta-prop_4th
UvrD-helicase
zf-rbx1
zf_C2H2_10
Sina_RING
Motif
Other DBs
NCBI-GeneID:
110508743
NCBI-ProteinID:
XP_021445183
Ensembl:
ENSOMYG00000046653
UniProt:
A0A8C7V741
LinkDB
All DBs
Position
28:complement(22202448..22212426)
Genome browser
AA seq
712 aa
AA seq
DB search
MSSNRQQQTGGGTGPGTSSSSTGGTTNANGATSVGGNVSTNVNNSSNVVPSRTLATTGDG
LLVPAAAVQSPISLATLSRPSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMSDMDRNLDSTVPNFEAPSP
APSSLMDSTEYPSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggaacggggcctgggacaagtagcagc
agtaccggtggcactaccaatgctaacggtgctaccagcgtaggcggtaacgtcagtacg
aatgtgaacaattcttcaaatgttgtgccctcacggactctggctacaactggcgatggg
ttgctcgtacctgcagcggctgtccagtctccaataagcttagccacacttagcagaccc
agttcatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatctgttttgaa
atgattgaggaggcacacatgacaaaatgtggacacagtttctgctacaagtgcattcgc
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaactcattctcaaacaaaaacagagatcagat
gaaaaacgtctgaagatggaccatccgaatgggtcaagatggcaagtgtttcaagacgtc
ctgggcacagaccaagaaaacctagatcttgctaatgtcaacttgatgctggaactcctt
gtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
atgagtgacatggatcgtaacttggacagcactgtgcccaatttcgaggctccctcacct
gcacctagtagtcttatggattcgacagagtatccgagtcaaccaccaggttttggtgga
acttcccagggtaagaggcaaacgtggtacaacagtactctggcttcacgtagaaagagg
ctcacagcgcactttgaagatctggagcaatgctacttctctaaccggatgacccgatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctcaaagttc
acacggtacaactctgtgcggccgttggcgaccctgtcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgatcgtgactgtgattactttgccatcgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacagtgatccaggatgctgtggac
attcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaagatgttggagtgtc
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcgaaagtgaag
ttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtccgacatcgaggtatcaccttgcttttggatgtgcggaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtgtcctatgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattcaagggccac
atcaatgagaagaactttgttggccttgcctccaatggggactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaaggggctgtccaagacactgctgacattcaag
tttgacactgtgaagagtgtgttggataaagacaagaaagaggatgacaccaacgagttt
gtcagtgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtacttgagcttgtttaa
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