Oncorhynchus mykiss (rainbow trout): 110509167
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Entry
110509167 CDS
T07259
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03250
Viral life cycle - HIV-1
omy04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110509167 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
110509167 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omy03400
]
110509167 (samhd1)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110509167 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
110509167
NCBI-ProteinID:
XP_021445816
Ensembl:
ENSOMYG00000023432
LinkDB
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Position
28:43504075..43530017
Genome browser
AA seq
613 aa
AA seq
DB search
MDRRKRSREDLPTADSNHFNTPEERVYAGLSRDGDLRQWSVEDTCGYLRLEGLGIWEEKF
REQQITGVGLRYLTETHLENMGIGPLGTRLQILHCLRKLWQIAAETKVFNDPIHGHVEMH
PLLVRIIDTPQFQRLRHIKQLGGTYFVFPGASHNRFEHSIGVGYLSGLLVQELNERQPEL
FISRRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKVRPESKWNHEEASLAMFDHLVCENA
LEPAMKEHGLVLPVDLVFIKEQIAGPQNTVPLSQGVSQPASEPWPYKGRPEEKSFLYEIV
ANKRNGIDVDKWDYFARDCFHLGIQNNFDYRRFLKFARVCEVDGKKHICTRDKEVGNLYD
MFHTRNCLHRRAYQHKVGNIIETMITEAFLKADPHIQIQGSGGKMFTISTAIDNMEAYTK
LTDHVFEQILYSSSSELAEAREILQNITCRRLYKCVGQTQAEKRMAVSQEKLLDWAGCVA
RSRPQNDLQNVTLQPGDFVVNIINMDWGMKEKNPIDKVRFYCKNDPTKAYRISKDQVSKL
LPERFAEQLIRVYCKKTDERAMEAAKKNFVQWCMDMNFSKPQDGDVIAPELTPLKASWAH
NNDSDDNDEEDSQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggataggcgaaagcgctccagagaagatttaccaactgcggacagtaaccatttcaat
accccggaggaaagagtttatgccgggctgtcgcgggacggggacttaaggcaatggagt
gtcgaggacacttgcggatacctgcgtctggaagggctcgggatatgggaggagaaattc
agagagcaacagataacaggagtggggttacgataccttacagagacacatctggagaat
atgggcatagggcctcttggcacacggctgcagattcttcactgcctgaggaagctgtgg
cagattgcagcagagaccaaggtgtttaatgaccccatccatggccatgtagagatgcat
cctctgctggtccgtatcatcgacacccctcagttccagaggctccgccacattaagcag
ctgggaggaacatactttgtcttccctggagcctcccacaaccgcttcgaacactccata
ggggtgggctacctgtcaggtttgctggtccaggagttgaatgagagacaaccagagctc
ttcatctctcgtagagacatattgtgtgtccagattgccggtctctgtcacgacttgggt
catggtcctttctcccatatgtttgatgggatgttcatccccaaagtgcgtccagaatct
aagtggaatcacgaggaggcgtccctggccatgtttgaccacctggtgtgtgagaacgcc
ttggagccggcgatgaaggagcatggcctggtccttcctgttgacctggtcttcatcaag
gagcagattgctggaccacagaacactgtccccctcagccagggagtaagtcagccagcc
agtgagccgtggccatataagggccgaccagaggagaagtccttcctctatgagattgtg
gccaacaaaaggaacggcatcgatgtagacaagtgggactacttcgccagggactgcttc
cacctgggtatccaaaataactttgactatcgtcgctttctcaagtttgcccgtgtgtgt
gaggtggacgggaagaagcacatctgcacccgagacaaggaagtgggtaatctgtatgac
atgttccacacacgcaactgcctgcatagaagggcctaccagcacaaggtgggcaacatc
atagagacaatgatcacagaggcctttttaaaggcagacccccacatccagatacaaggt
tcagggggaaagatgttcaccatctccacagcaatagacaacatggaggcctacactaaa
ctcacagaccatgtgtttgagcagattctgtactcgtcatcctctgagctggctgaggcc
agagagatcctccaaaacatcacctgcagacgcctctacaagtgtgtgggacagactcag
gctgagaagcgaatggcggtttcacaggaaaagctcctggactgggcaggctgtgtggcg
aggtccaggcctcagaatgaccttcaaaatgttactctgcagccaggggactttgttgtc
aatatcatcaacatggactggggtatgaaggagaagaaccccatcgacaaagtgcgcttc
tactgtaagaacgacccaaccaaagcttaccggatcagcaaggaccaggtgtccaagctg
ctgccagaacggtttgctgagcagcttatcagggtctactgtaagaagaccgatgagagg
gccatggaggcagctaagaagaactttgtccagtggtgcatggatatgaacttctccaaa
cctcaggatggagatgtgattgcaccagagctcacccctcttaaggcaagctgggcacac
aacaatgacagtgatgataatgatgaagaggatagccagtga
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