Oncorhynchus mykiss (rainbow trout): 110509348
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Entry
110509348 CDS
T07259
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03320
PPAR signaling pathway
omy04148
Efferocytosis
omy04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110509348
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
110509348
03320 PPAR signaling pathway
110509348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110509348
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omy03310
]
110509348
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
110509348
Nuclear receptors [BR:
omy03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
110509348
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Ortholog
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GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
110509348
NCBI-ProteinID:
XP_036823353
Ensembl:
ENSOMYG00000043308
UniProt:
A0A8K9XL09
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Position
Y:24753545..24914892
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AA seq
535 aa
AA seq
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METKPFMSLGFLKPQCSLVPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQRHLHIPSPS
SPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQMFQLNSQMNSVSSSEDIKPPLGLN
GVMKVPAQPSPGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVESTSGVN
EDMPVEKVLEAELAVEPKTETYTETNLGMPSSSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggggttcctgaagccccagtgctcgctggttccg
cccccccagcgaggacgctcgggggaggcctgctcctgtttcactggcatgtgtcacctc
caccacccccggatatctacaggtaacactcaacgccatctccacatcccctcgccatct
tccccgtcatggcagactccgcacctgggaagacacctgtatcaaataaattcatcaggt
caggtgacctcatctccactgagctctcccacgtcccaccggggcatgcacccatccctg
ctcaacccgtcctccatggggccctcaggctccttgcactctcccatcagcaccctgagt
tctcccatgaacggcctgggctcgcccttttctgtcatcaactcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagatgttccagctg
aactcccagatgaactcggtcagcagctcggaggacatcaaacccccgctgggtctcaac
ggggtgatgaaggtgcccgcccagccctcgccggggtgcatgcctctctccctcaccaaa
cacatctgtgccatctgcggagaccgctcctcaggtaaacattatggagtgtacagctgt
gagggctgtaaaggcttcttcaagaggacagtgcggaaggacctgacctatacctgccgc
gacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgccagtactgtcgctac
cagaagtgtctggcctgtggaatgaagagagaagttttgttacacacagccgtccaggag
gagcgccagcgggccaaagagcgcagtgagaacgaggtggagtccaccagcggcgtcaac
gaggacatgcccgtggagaaggtcctggaggccgagctcgctgtggaacccaagacagag
acctacaccgagaccaacctgggcatgccatccagctcgcccaacgacccggtgactaac
atctgccaagcagccgacaagcagctctttacactggtggagtgggccaagaggatcccc
cacttctctgagctgcccctggacgaccaggtcatcctcctacgagcagggtggaatgag
ctcctcatcgcatccttctcacaccgttcgatagcggtgaaagatgggatcctcctggca
acagggctacacgtccatcgtaacagcgcccacagtgctggagtgggagccatctttgac
agagtgctcacagaactggtgtccaagatgagagacatgcagatggataagacagagctg
gggtgccttcgagccattgtcctcttcaacccagattctaaaggcttgtcaaacccaggc
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagctgttgctgcggttaccagccctgcgttcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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