Oncorhynchus mykiss (rainbow trout): 110509612
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Entry
110509612 CDS
T07259
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
omy03009
]
110509612 (ddx56)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110509612 (ddx56)
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110509612 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
AAA_22
Motif
Other DBs
NCBI-GeneID:
110509612
NCBI-ProteinID:
XP_021446279
Ensembl:
ENSOMYG00000044322
UniProt:
A0A8C7UU71
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Position
Y:complement(11046317..11053829)
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AA seq
559 aa
AA seq
DB search
MATDRLQFHEMGIDDRILKALADLGWAQPTLIQEKAIPLALEGKDILARARTGSGKTAAY
AVPVIQRILTSKQNVREQAVRVLILVPTKELGQQVQAMIRQLTAYCARDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLSAQSLDLQASLETLVIDEADLLFSFGFEADLKSL
LCHLPKIYQSFLMSATLSEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSVQCEEEDK
FLLIYTLLKLHLVQGKTLVFVGAVERCYRLKLFLEQFSIPTCVLNSELPVHSRCHIITQF
NQGFYDYIIATDEQVLADPTTTAQAAEGKGKKKKKNAGRAKDKEYGVSRGIDFQNVSNVI
NFDFPTTVESYIHRVGRTARADNPGTALTFISHTELPLLAEVEDALIGDNTECALKPYGF
KMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDK
DLHPAVIKPHLKNVPEYLIPPTLRGVANPMSGRKRRRREKPKPDGVVKTTFKKDFRGKNP
LKSFHYTGGRSRGGKAGKS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacaggctgcagttccatgaaatgggcatagatgatcgcattttaaaggcg
ctggcggacttgggctgggctcagcccactttgatccaggagaaagccattccactggcg
ctggagggcaaggacattctagcccgggccaggactggctcaggaaaaacagctgcttac
gctgtgcccgtcatccagcgtattttgacatccaaacaaaatgtccgtgagcaggcagtg
agagtgttgatcctggttcctaccaaggagctggggcagcaggtacaggccatgatccgc
cagctgactgcctactgtgccagagacgtgagggtggcagacatctccggcaaggctgac
ctgtctgcccagaggcccatcctgatggaaaagccagatgtggtagtggggaccccctct
agggttctggcccacctcagtgcccagagcctggacctgcaggcctcgctggagaccctg
gtcatagatgaggctgacctgctcttctccttcggcttcgaggccgacctcaagagcctg
ctatgccacctgccaaagatctaccagtccttcctaatgtcagctactctcagcgaggat
gtccaggccctgaaggaactgctgctgcacaatcctgtgattttaaagctgcagggctcc
cagctgccagacagctcccagctgcagcagtacagtgttcagtgtgaggaagaggacaag
ttcctgctcatctacaccctgttgaaactgcacctggttcagggcaagaccctggtgttt
gttggggcagtggagaggtgctacagactcaaactgttcctggaacagttcagcatcccc
acctgtgtactcaactctgagctgcctgtccactccaggtgtcacatcataacccagttt
aaccaggggttctatgattacatcatcgccacggacgagcaggtattggctgatcccacc
accacagcgcaggctgccgaggggaaagggaagaagaagaagaagaatgcagggagagcc
aaggacaaggagtacggcgtctccagaggaatcgacttccagaatgtctccaacgtcatc
aactttgacttccccaccaccgtggagtcctatatccaccgcgttggacgaacggcacga
gcagacaacccaggcaccgcgctcaccttcatctcacacacagagctccccctgctggca
gaggtggaggacgcactcattggcgataacactgagtgtgctctgaagccgtacgggttt
aaaatggaggagattgagggcttcagataccgttgccgggatgccatgaggtcagtaact
aagcaggcggtgagggaggccagactgaaagagatcaaacaggagctgctcaactcagag
aaactcaagacgtactttgaggacaacccccgagacctgcagctgctgaggcacgataaa
gacctgcaccctgctgtcatcaagccacacctgaagaacgtaccagaatacctcatccct
ccgacgctgaggggagtggccaacccaatgtctggcaggaagaggaggaggagagagaag
cccaaacctgacggggtcgtcaagacgacctttaagaaggacttccgaggcaagaacccc
ttgaagagtttccactacaccggggggaggagccgagggggcaaggctggcaaatcctag
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