Oncorhynchus mykiss (rainbow trout): 110510097
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Entry
110510097 CDS
T07259
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110510097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110510097
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110510097
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
HNH_repeat
Motif
Other DBs
NCBI-GeneID:
110510097
NCBI-ProteinID:
XP_021447098
Ensembl:
ENSOMYG00000023029
UniProt:
A0A8C7VU10
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Position
Y:complement(32800580..32813597)
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AA seq
526 aa
AA seq
DB search
MATELTISESAVPLSEPHQVEDEEHWLYGGENTKKQNAPEGLPGPGDSLQLTSMGNTEEK
DAASQEAKGTEGEEEEDSDSDDDDDVKVTIGNIKTGAPSYMGTGMNLSLKPARCYASAAA
IKLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNEETWKGYCER
QRRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSIKTDYKPDFPPASVLALAANRL
KAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQPLVPPAGPP
LPLPMGMPPPHFLHPPPPVSGMPPPLHPPGMPPPSITGLFLPPLAPPPTLMMPPVDSSRA
PLPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGEDRGRGHWEYQGSHRERDRDQERGHT
PTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGRGREREEHQRDRRHRDKEESGK
HKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEHKD
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagagcattggctgtatgggggggaaaacaccaagaaacaaaatgcccccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaataccgaagagaag
gatgctgcatcacaggaagccaaaggtactgaaggtgaagaggaggaggacagtgacagt
gatgacgatgatgacgtcaaggtcaccattggtaacatcaaaactggtgcaccttcctac
atgggaacgggcatgaacctgagcttgaaaccagctcgttgctatgcctcagcagcagcc
attaagctgcagcccaaagggatagatatagagacactaggggccttcaatggtgcacca
gttgtggaggtggaaatggacatctttgaggacaaaccatggagaaagccaggtgccgac
ctctcagactacttcaactatggttttaatgaggaaacgtggaagggatactgtgagaga
cagcgcagactacagcttggcctggagcccagtgctcctctcagttttgaaaacaagata
acagttcagcagggaagggcaaccactttagaaaaggatacagaaccgtcttccatcaag
actgattacaagccagactttccccctgcttcagtcctggccctcgctgccaacagactg
aaggcaggacccccacctaacaggaaattgggtggaactattgatgtgattggtggacag
acaggagccattcgccgggttgaaggccgaaggagggaaatgcaggaacagaatcctatc
caggtgctcggagaccatggtaacaaggtacagcccttggttccaccagcaggacctcct
cttcctcttccaatgggtatgcccccaccacacttcctgcatcctcctccaccagtatct
ggtatgcccccacctcttcaccccccaggtatgcccccaccttccattacaggcctgttc
ctacctccccttgctcctccccctaccttgatgatgccacctgtggatagcagtagagcc
cctcttccttttggatacaacagtggagagtcaagcttcattagctaccctccagtctca
tcatcacacatgccttggggctctgtgctggagaaggggggggaagacagaggacgaggg
cattgggagtaccaaggaagtcatagagaaagagacagagatcaagagagaggtcatact
ccaaccaccagcgaatataatgaggatgaccgttaccactactacagccatgatcgagag
agtgagcgagaatttgagcacagttaccttcatgttcatgacagcagcggtgggcgtggc
agggagagggaggagcatcagcgagacagacgccatcgtgacaaggaggagagtggtaaa
cacaagtcttccaaacgcaagcagcatgatgatgagggggaggggcatcgcagacacaag
cacaagaaaagcaaacgcagcaaagaggacaaggatgtcccagaggatatgttggggcgt
ggggaagagcacaaggactga
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