Oncorhynchus mykiss (rainbow trout): 110510209
Help
Entry
110510209 CDS
T07259
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110510209
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110510209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110510209
NCBI-ProteinID:
XP_036824091
Ensembl:
ENSOMYG00000044583
LinkDB
All DBs
Position
Y:complement(36499597..36596534)
Genome browser
AA seq
565 aa
AA seq
DB search
MGSPAKSDEKTMDSINYNSHKSNFSHCLGGLPTAFCVILSVCSMAFCFLVNFRTAHLEYR
VQTLEMERMSPIPSDENGTVPGLQDIIEKLVHERLTKALPKLRAARDVIQECSCPPGPPG
KRGRMGRRGDSGSPGTPGRDGYPGPLGMDGKPGGPGPMGSQGLSGPKGEKGDQGDMGPRM
VFPRFDHGFLSGDQHTFHKRLLKGDQGQAGPPGPPGPPGSPGPRGPPGNTGKDGPRGPPG
EQGPPGRDGIDGLEGLMGPPGQKGEDGQQGVPGSQGSPGLKGEQGPAGDQGRTGLDGLPG
MKGLPGEKAVPGSYDNIGLGQVVQGLPGPPGPPGGQGSKGESGSPGAPGADGDKGAKGDR
GDDGMPGVAGEKGERGLMGQTGLAGADGKKGERGDSRFEDNLAQRISIPGPPGPPGPQGF
MGLDGRPGPKGEPGEGVKGDKGDAGDKGPPGLRGTQGLPGSTGLVGLPGTKGGKGEQGLP
GLDGFPGLMGQKGERGGRGDKGDRGMLGKKGLKGQKGEQGPPGLDQPCPVGTNGGREHPG
EAGQPSGAPCPLGRDGLPIPGCWHK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgggatcccccgcaaaatctgacgaaaagaccatggactcaatcaactacaacagccac
aaatccaatttttcgcattgtttaggcgggctgccaaccgcattttgcgtcattttgtcg
gtgtgttctatggcattttgttttttggtaaacttcaggacagctcacctggagtacaga
gtgcagactttggagatggagagaatgtccccgatcccttccgatgagaatggaacggta
cctggtcttcaggatatcattgaaaaactagtgcacgagagactgaccaaagcactgccc
aaacttcgcgctgccagggatgtcattcaagagtgctcctgtcctccagggcctccagga
aaacggggaaggatgggaagacgaggcgactctggatctccgggcacgcctggacgggat
ggttacccgggcccacttgggatggatgggaagcctggtggtcctggtcctatgggaagc
cagggactgtctgggccaaaaggagaaaagggagaccaaggagatatggggcccaggatg
gtcttccctcgctttgaccacggctttctctctggtgaccagcacacatttcacaaacgc
ctcctgaagggtgaccagggtcaggctggcccccctggacccccggggccccctggatca
ccagggcccagaggaccccctgggaacacagggaaggatgggcccagaggaccccctgga
gagcaggggccacctggtcgagatggaatcgatggattagagggactgatgggtcctcct
ggacagaagggtgaggatggacagcagggcgtgcctggatcacaggggtctccggggcta
aagggggagcaggggcctgctggtgaccagggcaggactggccttgatggactaccaggg
atgaagggcttaccaggagagaaggctgttcctggctcctatgacaacatcggccttggc
caagtcgttcagggtctcccagggccaccagggcccccaggaggccaagggtcaaaggga
gagtcaggctcacctggtgcacctggagctgatggggataagggagccaaaggggataga
ggtgatgatgggatgcctggagtggcaggggagaagggagagcgaggcctgatgggccaa
actgggcttgcgggagctgacggtaagaagggagagcgaggggattcaaggtttgaggac
aatctggcccagaggatctctatcccaggccctccagggcctcccgggccccagggtttc
atgggacttgatggaaggcctggccccaagggggaaccaggtgagggagtgaaaggagat
aagggggatgcaggcgacaaaggtcctcctgggctaaggggtacccagggtcttccaggt
tctacggggttggttggtctccctggcaccaaagggggaaagggagagcaaggattgccg
ggattagatggtttccccgggctgatgggacaaaagggggagagggggggcagaggagac
aagggtgacagggggatgctgggaaagaagggactgaagggacagaagggcgaacaaggc
cctcctggactggaccagccctgtcctgtgggcaccaatgggggtagagaacaccctggg
gaggcggggcaaccctcaggcgccccttgccccttgggtcgggacggattacccatacct
ggatgttggcataagtga
DBGET
integrated database retrieval system
