KEGG   Oncorhynchus mykiss (rainbow trout): 110511313
Entry
110511313         CDS       T07259                                 
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110511313 (tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:omy03000]
    110511313 (tbpl1)
   03021 Transcription machinery [BR:omy03021]
    110511313 (tbpl1)
Transcription factors [BR:omy03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    110511313 (tbpl1)
Transcription machinery [BR:omy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     110511313 (tbpl1)
  RNA polymerase III system
    TFIIIB
     110511313 (tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     110511313 (tbpl1)
SSDB
Motif
Pfam: TBP DUF3378
Other DBs
NCBI-GeneID: 110511313
NCBI-ProteinID: XP_036832303
UniProt: A0A8K9WP50
LinkDB
Position
4:43704019..43722541
AA seq 187 aa
MEPSNDVALDIIITNVVAVFRTRCHLNLRTIALEGVNVIYKPEYGKVLMKLRKPRITASI
WSSGKIICTGATSEDEAKQGARRLARTLQKLGFKVRFSEFKVVNVLAVCSMPFAIRLIDF
TKNNRPIASYEPELHPAATYRIKTLKATVQVFSTGSLTITGPNVQAVATAVEHIYPMLLE
CQKPLRK
NT seq 564 nt   +upstreamnt  +downstreamnt
atggagcccagtaatgacgtagcgttggatatcattatcaccaatgtggtggctgtattc
aggacacgctgccacctcaacctgcgcaccatcgctctagagggggtcaacgtaatctat
aaacctgaatatgggaaagtcctgatgaaactccgcaaacccaggatcaccgcttccatc
tggtcttcagggaaaatcatctgtaccggcgctaccagcgaggatgaggctaagcaggga
gcccggaggttagcccgcaccctgcagaaactgggcttcaaggtgaggttctcagagttc
aaggtggtgaatgtcctggcagtgtgctccatgcccttcgccatccgactcatcgacttc
accaagaacaaccggcccatcgccagctatgagccagagctccaccccgctgccacctac
aggatcaaaaccctcaaggccaccgtccaggtcttctctaccggcagccttaccatcaca
ggaccaaatgtgcaggctgtagccacggctgtagagcacatctaccccatgctgttagag
tgtcagaaacccctccgcaaataa

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