Oncorhynchus mykiss (rainbow trout): 110511313
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Entry
110511313 CDS
T07259
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110511313 (tbpl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110511313 (tbpl1)
03021 Transcription machinery [BR:
omy03021
]
110511313 (tbpl1)
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
110511313 (tbpl1)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110511313 (tbpl1)
RNA polymerase III system
TFIIIB
110511313 (tbpl1)
RNA polymerase I system
SL1/TIF-1B
110511313 (tbpl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
110511313
NCBI-ProteinID:
XP_036832303
UniProt:
A0A8K9WP50
LinkDB
All DBs
Position
4:43704019..43722541
Genome browser
AA seq
187 aa
AA seq
DB search
MEPSNDVALDIIITNVVAVFRTRCHLNLRTIALEGVNVIYKPEYGKVLMKLRKPRITASI
WSSGKIICTGATSEDEAKQGARRLARTLQKLGFKVRFSEFKVVNVLAVCSMPFAIRLIDF
TKNNRPIASYEPELHPAATYRIKTLKATVQVFSTGSLTITGPNVQAVATAVEHIYPMLLE
CQKPLRK
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atggagcccagtaatgacgtagcgttggatatcattatcaccaatgtggtggctgtattc
aggacacgctgccacctcaacctgcgcaccatcgctctagagggggtcaacgtaatctat
aaacctgaatatgggaaagtcctgatgaaactccgcaaacccaggatcaccgcttccatc
tggtcttcagggaaaatcatctgtaccggcgctaccagcgaggatgaggctaagcaggga
gcccggaggttagcccgcaccctgcagaaactgggcttcaaggtgaggttctcagagttc
aaggtggtgaatgtcctggcagtgtgctccatgcccttcgccatccgactcatcgacttc
accaagaacaaccggcccatcgccagctatgagccagagctccaccccgctgccacctac
aggatcaaaaccctcaaggccaccgtccaggtcttctctaccggcagccttaccatcaca
ggaccaaatgtgcaggctgtagccacggctgtagagcacatctaccccatgctgttagag
tgtcagaaacccctccgcaaataa
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