Oncorhynchus mykiss (rainbow trout): 110511431
Help
Entry
110511431 CDS
T07259
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omy00535
]
110511431 (col14a1a)
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Others
110511431 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
FN3_Tor_3rd
Pur_ac_phosph_N
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
110511431
NCBI-ProteinID:
XP_036791403
LinkDB
All DBs
Position
2:4327983..4572381
Genome browser
AA seq
1951 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLGTSKLHVSWKEPKGNVDG
YRVLYQSEPGEEYKELRVSKGDHKVVIQDFDAMKEYHVKVLAVRGNQQSRALQGKYAAED
LEGEGGERESTLPLRLDDTGGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVSAFSVGIDQTRIGLAQYSGDPRIEWHLNAFTTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSVMSSIIEGLTQIVCERVEEQDKEIKGESAGQETQ
GAPQDLVTSEVTARSFRVSWSHAPGSVEKYRVVFYPATQGGRPEEAVVDGTENSVVLWHL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
MVLYATLTEDQASDEKEMKVSDAVTDLQLEDLTPATEYTVTVYAMYGEEASDPMSSQQTT
LPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYAKTDGLKTDEVDVGPVTSWTLND
LTSAREYEVAIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVTAESFRVSWGHSAPGIV
LYKLTWAPYDGGDTKEMALSGDVDSFLLSGLSPNTEYEVMLQAVFKDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPHGQADLYRVVIESLLNGQKQE
VSVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGPAVTTITTTLPAPTQPPTPTPTSPPL
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFKLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMDMFGLVEKEYSNVEGVSLEPGSF
NSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITILFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNHDYKGDFQTVTFDEPDIKKMFYGSFHKLHMAISKTTARVVVDCK
VVGGKPINAAGNISTDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGR
SGPQGPPGPQGPSGHSIQGPPGSDGEKGEKGDVGLPGPQGVGGSPGGPGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATI
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGERGLPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPAGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGVQQLPHTNYQNYHPTGRYDNNDDEDD
EEDEEEEDPFAGYRGYPPQYYQPSYPHPPARPAPQSHSQDTELRSPGIMMSRFSRDVVTQ
RRATANTAQTGQTDQTGQRSDATADTEGEVEVIGEVQTGQTGQTDQTGQRSDVAADSEGE
VEVIGEVQTGQTGQRDQTGQTVQPPLYVPVG
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaaggttacgttttaaa
gtactggggacgagcaaattacatgtatcctggaaagagccgaaagggaatgtcgacggc
tatagagttttataccagagtgaaccaggcgaagagtacaaggagctgcgcgtttccaag
ggggaccataaagtggtgatccaggactttgatgccatgaaggagtaccacgtcaaggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgccgctgaagac
ctggagggggagggaggagagagggagagcacattgcctctgagacttgatgacaccgga
gggactgaggagatcaacgagatatctggagcggatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcgggaggctcaacttccgc
ttggtccgcatgttcctggagaacctggtcagcgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
accactaaagatgcagtcctggatgctgtgaagaacctgccctataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcaggctcc
aggagcggggtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccattggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcgtcatgagctctatcatagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcaggtcaggagacacag
ggagcccctcaggacctagtgacatcagaggtgacagccaggagtttcagggtgtcctgg
agtcacgctcccggcagtgtagagaagtaccgtgtggtgttctaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgtggcatctc
aactccttaacagagtaccagttagctgtgttcgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgccaccctgaccgaggaccaggcctccgacgagaaagagatgaaggtg
tcagacgcagtaactgatctacagctggaggacttgactcctgccactgagtacacggtg
acagtctacgccatgtatggagaagaagctagcgatcctatgagtagccagcagaccacc
ttgccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggaagctgcctctaggaaggtgacaggataccgcatcatgtacgccaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgacgtctgcaagggagtatgaggtagccatatttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaccctgtgccaggccctcttgacctccaggcc
agtgaggtcaccgcagagagtttccgggtcagctggggtcactctgctccgggcatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagatggctctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccgtcttcaaagaccaatcagagagtgatgcggtgttagtggtggagacgaca
cttgccaggacaacaacggttgccactacaacgccagtagtgcgtcaggcggtgagaggc
ctgcaggtccaagaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
aaggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gtcctggtgcctgggcagcagaccacagtccttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatggacaggacggcatcagtgtttcttct
gtgggcagaacattgcccctctcggcgcctagcaacctgagggtgtctgaggagtggttc
agtcgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacctctgtgccagggtcagctctggagacctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcaaagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccagcctctccagggcaccgccaagacattgtacctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtatgtgtgtccagtggcagccccat
ggtcaggctgacctctacagggtggtcatcgagtctctgctcaatggccagaaacaggaa
gtgagtgttggaggctctgcgtctagacagtgtttctatgatctgacccctaacagccag
tataagatcagcgtttccacccagctacaggacatggaggggcccgccgtcaccaccatc
actacaacactccccgcccccacccagccaccgacaccaacccccacgtcacccccccta
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacgggtcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggactgagttcaagctgaactcatacgccaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggaatctatcttcacctcagagggaggagtgaggaggggggttcctaag
gtactggtggtcctcaccgatggccgttcccaagacgacgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccatcggctttgctgatgcggactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcggttctgatgagcggcaacaccatggcaggcttcaggatgatggacatgttt
ggcctggtagagaaggagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttcccctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtttgccctctgactacaccatcaccatcctgttccgcctgctacca
gacaccccccaggagccctttgcattatgggagatcctcaacaaagacaatgaacccctg
gttggggtcatcctggacaatggtgggaagactctgacgttcttcaaccacgactacaag
ggagacttccagacagtcacttttgacgagcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatggcgatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgcagctggcaacatcagtacagacggggtggaggta
ctgggacgcatggtacgatccagagggaagagagacaactcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggaggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcgt
tctggaccacagggcccccctggtcctcaagggcctagtggacattccatccagggacca
ccggggagtgatggtgaaaagggggaaaaaggagatgttggtttaccaggacctcagggt
gttggtggatctcctggcggaccaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtacgacagggcctgtgggcagtcctggagcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacttgcagtctcaagccaccatc
agggccttagcacgtcaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggacggtaccgggacctcca
ggagagcccggtcgcaggggtctgccagggccacagggagaggggggacccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggagagaggtctcccagga
gagaagggggaaagggggagtcaaggtgtggggacacagggccccagaggtcccccagga
ccaccaggtcttctaggagaggggcgtacaggcagccaaggccccgccggtagaccaggc
agccagggtaccccagggcgaccaggcacccctggatccacgggccctgctggtgctgct
ggctactgcgaccagaactcctgtttgggttacaacgttggagtacaacaactcccccac
accaactaccaaaactatcaccccactggccgttatgacaacaacgatgatgaagacgac
gaggaagatgaggaggaagaggacccattcgctgggtatagaggctacccacctcagtac
taccagcccagttaccctcacccccctgcacgccctgcaccccaatcccactcccaggac
actgagctaaggtccccagggataatgatgagccgtttctccagagacgtggtcacacag
agaagagccaccgctaacacagcccagacaggacagacagaccagactggacagaggagc
gatgctacagcagatactgaaggagaggtggaggtgattggagaagtccagacaggacag
actggacagacagaccagacaggacagaggagcgatgttgcagcagattctgaaggagag
gtggaggtgattggagaagtccagactggacagactggacagagagaccagactggacag
acagtccaaccacctctctatgtccctgtgggttga
DBGET
integrated database retrieval system
