Oncorhynchus mykiss (rainbow trout): 110511504
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Entry
110511504 CDS
T07259
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110511504
04131 Membrane trafficking [BR:
omy04131
]
110511504
03029 Mitochondrial biogenesis [BR:
omy03029
]
110511504
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110511504
Membrane trafficking [BR:
omy04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
110511504
Mitochondrial biogenesis [BR:
omy03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
110511504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
110511504
NCBI-ProteinID:
XP_036790012
LinkDB
All DBs
Position
10:79443387..79574541
Genome browser
AA seq
3257 aa
AA seq
DB search
MATMDKLMKAFESLKSFQQQQGPPTAEETAQKQKKELATTKKDRVAHCLTICENIIAQSL
RTSPEFQKLLGIAMEMFLLCSDDRESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSAAVPKI
MTVLGHFANDGEVKVLLKSFVANLKSTSPTIRRTAASSAASVCQHSRRASYFYTWLLNVL
LGLLVPVDEEHPNHLVLGVLLTLRYLMPQLQQQDRTTSLKGSFGVMRKEADLQPTPEQLL
QVYELTLHYSQHGDHNVVTASLELMQQMFRTPPPELLHMLITPGSVPHASVFRRDVERRA
HSGSILEFIAGGGSSCNSPLLLRKQKGKMLSGEEEGLEDDPERAEVTTGAFTASVAGADA
TAQVVDIITQQPRSSQHALQPGDSVDLGGASSEQGTTALGTSGGEGGAGTPESPNDNAAD
EDMLSHSSSGANVTPETADYATPENAEMPDGPLVDPLGDPSLPPSADSSQTTTEGPDSAA
TPSDAAELSRPRLPRVMVEPPFEAPPSPTSTEGPDASDSDSSVYSSSSSSSSSAAAAASS
SSSSLSSGADASSSGSSKVLDTSESLYSGMQIGTLQDEEEEGAVPSSHPEPFSQSALALS
RPHLLEGRGHNRQASDSSVDHFIPKEEPAETTELENKPSRIKGPIGHYTDQGAEPLVHCV
RLLSASFLLTGQKNGLVSDKEVRVSVKVLAVSCIGAAAALHPEVFFNSLYLEPLDGETQQ
EQQYISDVLCLVAHGDPQVRGAAGVLCGAVIHSALNKTRYNIHTWMTSVHTSTGNPLSLV
DLVPVLQNTLKDESSVTCKMACSAVRHCIMTLCSSTLSELGLHLLVDLLTLKDCSYWLVR
TELLETLAEIDFRLVNFLEKRTESLHKGEHHYTGLLRLQERVLNGVVIHLLGDEDPRVRH
IAAATVSRLVSVLFYECDQGQADPVVAIARDQSSVYLQLLMHETLPPSHFTVSTITRTYR
GYNLSQGVSDVTVENNLSRVVSAVSHALTSSTSRALTFGCCEALHLLTTTYPACTWSTGW
HCGYVSSTVTHPNRSNLNRSRARSHSLSQPGSGPLEEGKRSLTVGMANMMMSLLSSAWFP
LDLSAHQDALLLAGNLLAATAPQCMCSPWAGEEEGGPVPGKTEEPWAAVGERPLVVLVEQ
LFSHILKILNICAHVLDDTPPGPAVKATLPSLANAPSLSPIRRKGKEVAEPSTIPMSPKK
GSETNTGRPADSSGSTANVNKSTTLGSFYHLPTYLKLYDVLKATHTNYKVTLDLHSTNEK
FGGFLRSTLDVLSQLLEMATLHDIGKCVEEILSYLKLCFSREPLMATVCVQQLLKTLFGT
NLASQYEGAQGGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAE
QEQDASGWFDVMQKVSNQLRSSITNVTKQRGDKNAIHNHIRLFEPLVIKALKLYTTSTSV
ALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLV
LLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGK
ELDTQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQ
MHLDSPEALGVLNTLFETVAPSSLRPVDMLLKGMFTTPATMANVNTVQLWVSGVLAVLRV
LISQSTEDIVLSRVHELSLSPLLLSCPTIRRLRDDSSLSSPPPPPLATSATVAPDNQEAN
GERVPPEETFARFLLQLVGVMLDDISTRQVKVDMTEEQHTFYCQQLGTLLMCLIHIFKSG
MFRRITAAATRLLKGDAVLGSGPGVSGVFYPLEGLNAMVGCLVTTHPSLVLLWCQVLLII
NYTNYSWWTEVHQTPRRQSLSCTKLLSPHSSGGVEEERPEARLAMCNREIVRRGGLILFC
DYVCQNLHDSEHLTWLIVNHVRDLIDLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDN
LTTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAET
LQNSLVQLPVEELDRIQEYLQISGLAQRHQRFYSLLDRFRASVAEDTSSPSPPVTSHPLD
GEPPPAPELVKADKEWYVALVMSQCCLRGDGSFLETTELLTKLPPDDLSTIMSCKDFNLS
LLCPCLSLGVQRLTRGQGSLLLETALAVMLDHLSRVTQLLPVPHRSFLPPAKPDPAEPYW
DNLAIVYGEAGLYPRVMSLCRALSQYLLCVGQLPSPLQIPEDKQHLITTFTTMATELVVW
RVLQDSVPLSVDLQGALSCLCLALQQPCVWNTLSTAPYKTHTCSIIHCLRLLITAVAVGP
GDHLLHPGRKRTTGSDGDSDQVHSPNTDNVCERRSCEIMAELVEGLQSVLSLGHHRNSGI
PAFLTPMLRNIIISLSRLPLVNSYTRVPPLVWKLGWSPRPGGEFGTTLPEIPVEFLQEKD
VFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPISMDQEEEREQEEDLERTQLNVLAV
QAITSLVLSSMILPTAGNPTVSCLEQQPRNKTLKVLDTRFGRKLSVIRGAVEREIQAMVS
KRDNVHTHHPYHTWDPVPSLSAVSPAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSV
WLGNNITPLREEEWGEDEEDETDTPAPASLPTSPINSRKHRAGVDIHSCSQFLLELYSQW
LLPGSPSNRRTPVVLISEVVRSLLAVSDLFTERNQFDMMFTTLMELQKSHPAEDEIMNQY
LVPALCKAAAVLGMDKATSEPVCRVLELTLHSTHLPSRMGALHGLLYVLECDLLDDTVKQ
LVPAVSDYILSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFTAGVIQMCGV
MVSASEDSTPSVIYHCVLRGLERLLLSEQLSRMDGEALVKLSVDRVNMPSPHRAMSALGL
MLTCMYTAVCTTAESALGSEVMGSEVRGQGSEVTSGPVAFSSGKEKASPGRPAGAVDPQA
PDSESVIVAMERVSVLFDRVRKGLPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQ
QPYPQFMATVVYKVFQTLHATGQSSMVTDWVLLSLSNFTQRTPVAMAMWSLSCFFISAST
SQWVSALLPHVISRMGKSEVVDISLFCLVALDFYRHQLDEELDRRAFQSVFQTVASPGNT
YQQLLDCLQSIHQDTSL
NT seq
9774 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggataaattaatgaaggcctttgaatctctcaagtctttccaacaacaa
cagggaccgccgacggccgaggagacggctcaaaaacagaagaaagagctggccaccacc
aaaaaggacagagtggcccactgcctgaccatatgtgagaacatcatagcccagtctctg
agaacgtctccggagttccagaagcttctgggtatcgccatggagatgttcttgctgtgc
agcgacgacagagagtcggacgtcaggatggtggcagacgagtgcctgaacaaaatcatc
aaagcgctgatggactccaacctgcccagacttcagctggagctctacaaagaaattaaa
aagaatggtgcctctcggagcctgagggctgctctttggaggttcgctgagctagcacac
ctcgtcagaccacagaaatgcagaccgtacctggtgaacctcctcccctgtctgaccagg
atcacgaagagacaggaggagactgtccaggagaccctgtcggctgccgtgcctaagatc
atgactgttctgggacacttcgctaatgacggagaggtcaaggtgttgctgaagtcgttt
gtggccaacctgaagtccacttctcctacgatccgtcggacggccgccagctcagcggcg
agtgtttgtcaacactcgagacgggcctcctacttctacacctggctgctcaacgtcctg
ctgggtctgttggtccctgtcgatgaggaacatcctaaccacctggtcctgggggtgttg
ttaacccttcgctacctgatgcctcaactacagcaacaggacaggaccaccagcctgaaa
ggaagcttcggagtcatgaggaaggaggcagacttacagcccacgcctgaacagctactg
caagtctatgagttgactctacactacagccagcatggcgaccacaacgtggtgacggcc
tctctggaactgatgcagcagatgttccggactcctcccccggagctactgcacatgctc
attacgcccggcagcgttccgcacgccagcgtgttccgacgggacgtggagagacgcgcc
cactccggcagcatcctggagttcattgccgggggcgggtcttcctgtaatagtccactc
ctcctcagaaaacagaaaggcaagatgctgtcgggggaggaggaggggttggaggacgac
cctgagagggcagaggtcaccaccggggcctttacagcctctgtggcgggcgccgacgcc
actgcacaggtggtcgacatcattacccagcagccccgctcatcacagcatgctctgcag
cccggcgactccgtggacctcggtggcgcctcctcggaacaaggaacgactgccctcggc
acctccggcggcgagggaggggcggggactcccgagtcgcccaatgacaacgcagcggac
gaggacatgctcagccacagctccagcggggctaacgttaccccggaaacggccgactac
gccacgccggagaacgcggagatgcccgacgggcccctggtggaccccctgggagacccc
tcgctgcccccgagcgccgactcgtcgcagaccaccacagaagggccggactcggccgcc
acaccttcagacgccgctgaactctcgcgtccgcggttgccacgggtgatggtggagccg
ccgtttgaggcccctccctctccgacctccaccgagggtccagacgcgtccgacagcgac
tcttccgtctactcctcctcttcctcctcttcctcctccgccgctgctgctgcttcttct
tcttcttcctccctctcctctggcgccgacgcttcctctagcggtagtagcaaggtgttg
gacaccagtgagagtctgtattcagggatgcagattggaactttacaggatgaggaagaa
gagggagccgtaccttcatcacaccctgaacccttctcccagtccgcactggctctgagt
agaccccacctcctagagggcagaggtcacaacagacaggcgtcagacagcagtgtggat
cacttcataccaaaggaggagccagcggagaccacagagctggagaacaagccatcgagg
ataaagggtccgattggccactacacagaccaaggggcggagcctctggttcactgtgta
cgactcctctctgcctccttcctgctgactggacagaagaatgggctggtctctgataaa
gaggtccgtgtcagtgtgaaggttctagcagtcagctgtatcggagcagcagccgccctt
catcctgaagtcttcttcaactctctgtacctggaaccactggacggagagacacagcag
gagcagcagtatatcagtgatgtgttgtgtctggttgctcatggagaccctcaggtcaga
ggtgctgcaggggtgttgtgtggcgctgttatccactctgctctcaacaagacacgttac
aacatacacacctggatgaccagcgttcacacctctacaggtaacccgttgtccctggtg
gatctagttcctgtactacagaacactctcaaggacgagtcctctgtcacctgtaagatg
gcctgctctgcagtcaggcattgcatcatgactctttgtagcagtactctgagtgagttg
ggtctgcatctcctggttgacctgctgaccttaaaggactgttcctattggctggtcagg
acggaactcctggaaactctggcagagatagatttccggttggtgaacttcctggagaag
agaacagagagtttacacaaaggagagcatcactacactgggttgctaaggttacaggag
agagtgttgaatggcgttgtgattcatttgttgggagacgaagaccctcgagtacgacac
atagccgctgctactgtcagcaggctggtcagtgtgttgttctatgagtgtgaccagggt
caggctgacccggtggtggctatagccagagaccagagctctgtgtatctacagttactg
atgcatgagacactaccaccttcacactttactgtctctaccatcaccaggacgtatcgt
ggttataacctgtctcagggagtgtcagacgtcactgtggagaataacttgtcaagagtc
gtctctgcggtgtcccacgctctcacctcctctacgtcacgggccctcactttcggctgc
tgtgaggcgctgcatcttctgaccaccacctacccagcatgcacctggagtacgggctgg
cactgtggttacgtcagctccaccgtcacacaccccaaccgatctaacctcaaccgctcc
cgggcacgctcacacagcctctctcagcccggctcaggcccattagaggaagggaagagg
agtctaacagtagggatggctaacatgatgatgtctctgctgtcctctgcctggtttcct
ctggacctctctgctcaccaagatgctctgctgctggccgggaacctgctcgctgcgacg
gctccacagtgtatgtgtagtccctgggctggggaggaggagggagggccggtccccggt
aagacagaggagccctgggcagcggtgggagagcgccccctggtggtcctggtggaacaa
ctcttctctcacatcctcaagatactcaacatctgtgcccacgtgctggacgacacgccg
cccggacccgccgtcaaggccaccctgccgtccctagccaacgctccctccctcagcccc
atcagaaggaaaggcaaggaggtagcagagccaagcaccattcccatgagccctaagaaa
ggcagcgagaccaacactggcaggccagcggacagctcggggtccacggctaacgtcaac
aagtccacaaccctgggaagcttctatcatctacccacctacctcaaactgtacgacgtc
ctcaaagctacacacaccaactataaggttacgttggacctccacagcaccaacgagaag
ttcggagggttcctgcgttctacgctggacgttctgtctcagctgctagagatggccacg
ctgcacgacatcggaaagtgtgtggaagagatcctcagctacctgaaactctgcttctcc
agagaacctctgatggccacggtctgtgttcaacagttattgaagacgttgtttggtacc
aacctagcctcccagtacgagggggcccagggcggtcctagtcgatcccaggggaaggct
ctccgtctgggctcgtccagcctgagacctggcctctatcactactgcttcatggccccc
tacacacacttcacccaggccctggccgacgccagcctcaggaacatggtgcaggctgag
caggagcaggacgcgtcagggtggtttgatgtaatgcagaaggtgtccaaccagctgaga
tccagtatcaccaacgtgaccaaacagagaggagacaagaatgcgatccacaaccacatc
cgtctgtttgaacctctggtgatcaaggctctgaaactgtacaccacctccacctctgta
gcgctgcagagacaggtcctagacctgctggcgcagctggtacagctacgagtcaactac
tgtctgctggactcggaccaggtgttcataggttttgtgctgaagcagtttgagtacatt
gaggtgggacagttcagagattctgaggcgatcgtccccaacatattcttcttcctggtt
ctgttgtcgtacgagcggtaccactccaaacagatcatcagcatcccaaagatcattcaa
ctgtgtgatggcatcatggctagtgggaggaaggctgtcacacatgccatcccagccctg
cagcctatagtccatgacctgtttgttctgagaggctccaacaaggctgatgctgggaag
gagctggacacccagaaagaggtggtggtctccatgctgctgagactcatacagtaccac
caggtgctggagatgttcatcctggtcctccagcagtgtcacaaggagaacgaggacaag
tggaagagactgtccagacagatcgctgacatcatcctgcccatgataggaaaacaacag
atgcacctggactcccctgaggctctgggagtgttgaacactctgtttgagacggtcgct
ccctcctctctccgcccggtagatatgctgctgaagggaatgttcactacacctgctacc
atggctaatgtcaacacagttcagctgtgggtgtcaggtgtcttggctgtcctccgagtc
ctcatctctcagtccactgaagacatagtcctctctcgtgtccacgagctctccctctct
cctctcctcctctcctgtcccaccatccgacgtctccgtgacgacagcagcctctcgtcg
cccccgccaccgcctctggcgacctcggcaactgtcgcccccgacaaccaggaggccaac
ggagagcgggtgccgccggaggagacgtttgccaggttcctactccagctagtaggagtg
atgctagatgacatctcgaccagacaggtgaaggttgacatgacagaagagcaacacacg
ttctactgtcaacagctggggactctgttaatgtgtctcatacacatcttcaagagtggc
atgttccgtaggatcacagcagcagccactcgtctcctgaagggtgatgctgttctgggt
tcaggtccaggggtcagtggtgtcttctaccccctagagggtcttaatgccatggtgggc
tgcctggtgaccacacacccctctctggttctactctggtgccaagtcctcctcatcatc
aactacaccaactacagctggtggacagaggtacaccagacacccaggagacagagtctg
tcctgtaccaagctgctgagccctcattcatcaggaggggtggaggaggagagaccagag
gccagactggccatgtgtaacagagagatcgtacgcaggggaggactcattctcttctgt
gactacgtgtgtcagaacctgcacgactcggagcacctgacctggctgatcgtcaaccac
gtccgtgacctcatcgacctttcccatgagcctccggtgcaggacttcatcagcgccgtt
caccgcaactcggccgcctccggactgttcatacaggctatacagtcacgttgtgacaac
ctcactactcccaccatgttgaagaagactctccagtgtctagaagggatccacctgtcc
cagtctggttctctgttgatgctctacgtggacaaactactgaacactcctttcagagtc
ctggctcgtatggttgatactctggcctgcaggagggtggaaatgctgctggctgaaaca
ctacagaacagtttagtccagctgcctgtggaggaactggacagaatccaggaatacctt
cagatcagtggactagctcaacggcaccagaggttctactccctgctggacaggttccga
gcctccgttgccgaggacaccagcagcccctcccctcctgtgacatcacaccccctggat
ggggaaccgccacctgcccctgaactagtcaaggctgacaaggagtggtatgttgccttg
gtgatgtcccagtgctgtctccgtggtgacgggtcgttcctggagacaacggaactcctg
accaaactacctcctgacgacctctcaaccatcatgagttgcaaggacttcaacctgtct
ctcctctgtccgtgtctgagtctgggggttcagaggttaacccggggtcaggggtcgttg
ctattggagacggccctggccgtgatgctggatcatctgagccgggtcacacagctactt
cctgttccacaccgttccttcctgccgccggccaaacctgacccggccgaaccctactgg
gacaacttggctatcgtctatggtgaggctggactctacccgcgggtgatgtctctgtgt
agagcgctgtctcagtatctgctgtgtgtgggtcagcttccttcccctctgcaaatccct
gaagacaaacaacatctcatcaccaccttcaccaccatggctaccgagttggtggtctgg
cgtgttctccaggacagtgttcctctgagtgttgacctgcagggggctctgtcctgtctg
tgtctggccctgcaacaaccctgtgtctggaacacactgtctacagccccgtacaaaaca
cacacctgttctatcatacactgtctacgactcctcatcactgcagtggcagtaggtcca
ggtgaccatctgttacatccagggaggaagagaaccaccgggtcagatggtgattcagac
caggtccactctccaaacactgacaacgtgtgtgagcgacggtcgtgtgagatcatggct
gagctggtggaaggtctccagagcgttctgtctctgggtcaccatagaaacagcggaatc
ccagccttcctcacaccgatgctccgaaacatcatcatcagtctgtccagactaccgctg
gtcaacagctacactagagtcccccccctggtgtggaagctgggctggtcccctcggcca
gggggagagttcggtaccacccttcctgagatccctgtagagttcctgcaggagaaggac
gtgttcagggagttcctctatcgcatcaacacactgggctggagcagtaggacccagttt
gaagagacctgggccacactgctgggagttctggtcactcaacccatctctatggaccag
gaggaggagagggaacaggaggaggacttggagcgtacccagttgaatgtgttagcggtc
caggccatcacgtctcttgttctgagttccatgattctccctactgccggaaaccctact
gtctcctgtctggaacaacagccgagaaacaagacccttaaagtcctggacacacggttt
ggcaggaagttgtcagtgatcagaggagccgtggagagagagatccaggccatggtgtcg
aagagagacaacgtacacacacaccacccctaccacacctgggaccctgtcccctccctg
tctgctgtctcaccagcaggtacactgatcagccatgagaaactcctgctgcagatcaac
acagagagagagatggggaacatggactacaaactgggacaggtgtccatccattctgtg
tggctggggaacaacattacccctctgagagaggaagagtggggtgaggatgaggaagat
gagactgatactccggcccccgcctctcttcctacctctcctatcaactccaggaagcat
cgtgcaggtgtagacatccactcctgttctcagttcctattggagctctacagccagtgg
ctcctccccggttcccctagcaacagacgcacccctgttgtgctcatcagcgaggtggtc
cgatcgttgttggcggtctctgacctgttcacggagcgtaaccagtttgacatgatgttc
accaccctgatggagctgcagaagagtcatcctgctgaagatgagataatgaaccagtac
ctggtaccagctctctgcaaggctgctgctgtcctgggcatggacaaggcgacctctgaa
cctgtgtgtcgggtgttggagctgaccctgcacagcacccacctccccagccgtatggga
gcgctgcacggcctgctgtacgtactggagtgtgacctgctggacgacacagtgaaacag
ctggtacctgccgtctcagactacatactgagtaacctacgggccatagcacactgtgtg
aacttgcacaaccagcagcatgtcttggtgatgtgtgctgtggccttttacatgatggag
aactaccctctggatgtaggagccgagtttactgctggggttatacagatgtgtggtgtg
atggtatcagccagtgaagactccaccccctcagtgatctaccactgtgtgttgcgtggg
ttggagcgcctcctgctgtcggagcagctgtctcgtatggatggagaggcactggttaaa
ctgagtgtcgaccgggttaacatgccaagccctcacagagccatgtctgccctgggactc
atgctcacctgcatgtacacagcggtgtgtaccacagcagagtcagcgttggggtcagag
gtgatggggtcagaggttagaggtcaggggtcagaggttacctcgggtcctgttgctttc
tcctcaggcaaggagaaggccagccctggtcgcccggccggcgctgtcgaccctcaggcc
cccgacagcgagtctgtcatcgttgccatggagagggtctctgtgctcttcgacagggtc
cgtaagggtttacccagcgaggcacgggtggtggccaggattcttcctcagttcctggac
gacttctttcctccgcaggacgtcatgaacaaggtcatcggagagttcctgtccaatcag
cagccttacccacaattcatggctactgtggtctacaaggtgttccagaccctccatgct
acaggccagtccagtatggtgacagactgggtgttactgtctctgtctaactttacccag
agaaccccagttgccatggccatgtggagtctgtcttgcttcttcatctctgcctccacc
tcccagtgggtctctgccctcctgccccatgtcatcagccgtatgggtaagagtgaggtg
gtggacatcagtctgttctgtctggtagccctggacttctacagacaccagctggatgaa
gagttggaccgcagagccttccagtctgtcttccagaccgtggcctcgcctggcaacacc
tatcagcagctactggactgtctgcagagtatccaccaagacacatcactctga
DBGET
integrated database retrieval system
