Oncorhynchus mykiss (rainbow trout): 110511718
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Entry
110511718 CDS
T07259
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omy03016
]
110511718 (tarbp1)
03036 Chromosome and associated proteins [BR:
omy03036
]
110511718 (tarbp1)
Enzymes [BR:
omy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
110511718 (tarbp1)
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
110511718 (tarbp1)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110511718 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
110511718
NCBI-ProteinID:
XP_036816808
LinkDB
All DBs
Position
23:complement(60186226..60225168)
Genome browser
AA seq
1678 aa
AA seq
DB search
MSSILINALLSSCHDPDTLFNTLCWPTDSWPDTERVEALTTFIDGIGKLPQSDTSDDGDK
VAFSIAKRDIFLRKVESIIWTQCLPLFLKVSNGDGACKGKRVPDGRAEITIAVCRLLSVC
INTLCDTAVSGRVARAVLPSFQLPDGETEEELPGQGEGRLGIDVAIEAMSVILPAVSSNE
ELTTSILSSALSCIKTLPDALVSKITVRLIFTLLNCYSEDGIASKLRFILEDLCSWHKSD
SSNTDSPVVTERALLCLTTLSDYLFSPAKVQQHTLPQSLSYTRPDPRCSLQFWRILQDGL
THKDNVSRKRALYLLKRCVALSEDEAVEFPSSSVSSEDNEEIIFRWAPDRCKLLREFWED
YALVMETLEENQIHVVRPVLNRIHTLIQTAANDSQGVSLFHPSWLLGVYQRMFHSENKSV
MREGVDHLLELQVLRRPAFALAFSQFILGPFMDVMSESSLFHRTAGQSVGECPELGVKLQ
VFMVTFFSSLPQENRGPVLLQLVQRLGSQHWCAVPILFLSRALSHLPPCPLLGPDGLQAL
REVLRCTMITHQVLLRGAAQCFLLNSALSLTDVTLVTLDDVFSLLVHFRADESLRRGTPL
WNQLCDWLDDSEGSFRPCVRESADGTSTSSEIETVRGYVQHQMEFFLRVPASTDQTDSVP
DPGEAELLAKAILLCVDIEGRTQRSGGEQTTGVSGGMDSLLRPLLDTLSRLHTNVYLPLR
KTDKSLQLLLRLLQLTPARHTPAAVLQLPPARHTPAAVLQLTPARHTPAAVEKEQEDSVT
VSMETLVLGVVEPIQEFILRRLSGELQELCDVERAELYLSVLKEVVLMYSVLEWNHSKVQ
EAYFPRLLRYVLRTLEADQIPSVAGQVSRAVAMASLAMTCEVAALGVFNLQSETTILLVH
LSSYFYSPAPPPAPPLSLVNFNQTLLKPPTAAQSTGVSEQGPLLKDWGRMAAHFIRDQWT
CLGYGRRIGPPGPLELPRASGSLQAAIEALSLLPSGLVLPVLDFMASMLPQVALSEEALC
VEAVTVSWKLVLGLSSNPHDFWPTLQGFVTMAFHHSLLELTEEQAPGLTVTLQQIAVELM
ELSQAKTGVFNVLIQHCCHTWLPSDPGSEGQSQSDAMFSSALLHLDILAEACVYGPVFRR
DQRLIQEVQVYVERLGEECAANTAVPSDNRDDQFPRVCVVAFLSRLQPSNQLHERLMEEL
VLCLLKKDEAISKSKQRYYSNSLQHRVKNRVWQTLLMLLPKLRGEFVGTVLGRVFEAGFV
SNQASVKYLIEWKMVLILVQYPEHIDRLWACFSVDQEKTKTSVCTFLSVLVHLNIIMPQL
KEKAVQWRKALDVILQWCFSHNFSVRLYALLALKRVWGLEGPGGADGLGGLATVVKACLH
QAEAMQSTGNANKNWSRIQDHFFFGGFHPVRDYSVETIFYTFPSLSEVFEDEWIPPWKFE
KLVDFSQSASLPLRNPVPDLSQIQPGDWIQQDKGDQDGEERWAEVQKKMTPWRLGIQEQE
PELGLVPQQRAARLGKLHSALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVSDK
HFQALSVSSELWLPLLEVKPVELADFLQLKKREGYCIVGVEQTANSQSLKDYKFPEKTLL
LLGNEREGIPANLLQLLDVCVEIPQQGVIRSLNVHVSAALLVWEYTRQYLPTTGVKSD
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattttaatcaatgcccttttatcaagttgccatgatccggatactttgttt
aacacgttgtgctggccaactgactcgtggccggacacagaaagagtagaggcactgaca
acgtttattgatggaattggtaaactaccccagtctgacacatctgacgatggcgacaaa
gttgccttttcaattgcaaaaagagacatctttctacgaaaagttgaatcgatcatttgg
acacaatgtttaccacttttcttgaaagtctctaacggagacggggcgtgcaaaggtaaa
cgtgtgccagatggaagggctgaaatcaccatcgctgtgtgcaggcttctttctgtctgc
atcaacacactgtgtgacacggccgtttcggggcgagtcgcccgcgctgtcctgccatcc
ttccagctgccagacggggagacagaggaagagcttcccggccagggtgaggggcggctg
ggtatcgacgtggctatcgaagccatgtcagtcatcctacccgctgtctcatccaacgaa
gaattgaccacgtcgatcctctcatctgccctgtcctgtatcaagacgttaccggatgct
ctggtctccaaaatcaccgttcggcttattttcactctcctcaactgctacagcgaggat
gggatagcgagtaaactccggttcattttagaggatttgtgtagctggcacaagagtgac
agctcaaacacggactcacctgtggtgacagaacgcgccttgctgtgtttaacaactctc
tcggactatctcttctctccggctaaagtacagcaacacacccttcctcaaagtctgagc
tatactcgacctgaccctcgttgttctctgcagttctggaggattctacaagatggactg
acgcacaaagacaacgtgtccaggaagcgggcgttgtacctgctgaaaaggtgtgtcgct
ctgtcagaggatgaggcggttgagtttccaagcagttcagtgtcaagtgaagataatgag
gagatcatattcagatgggccccagacagatgcaagctgctcagagagttctgggaggac
tatgccttggttatggagacactggaggagaaccagattcacgtggtccgccctgtgctc
aacagaatccatacgttgatccaaacagcagccaatgatagtcaaggcgtcagtctgttc
cacccgtcatggctgctgggtgtgtaccagcgtatgttccacagtgagaacaagtccgtc
atgagagagggagtggatcacctactggaactccaggtgctccgacgccctgccttcgcc
ctggccttctcacagttcattctgggtcctttcatggatgtgatgtctgaaagctccctc
tttcacaggactgcaggacagagtgtaggagagtgtcctgagctgggagtcaagctgcag
gtcttcatggtcacgttcttcagcagcctgccacaggagaacagaggtcctgtgttgctg
cagcttgtccagcggctaggttctcaacactggtgtgctgtccccatcctcttcctctct
cgggccctgtcccaccttcctccctgccctctcctgggccccgacggcctgcaagctctc
agggaggtgctccgctgcactatgatcacccaccaggtgctactgagaggagctgcccag
tgtttcctgctgaacagtgccctctccctgacagatgtgaccttagtgacattggatgat
gtgtttagtttgctggtgcatttcagagcagacgagtctctacgtagaggaacaccgctc
tggaatcagctgtgtgactggctggatgacagtgaaggcagcttcaggccctgtgtcaga
gaatcagctgatggtaccagtacttcttcagagatagagactgtgagaggctacgtccaa
caccagatggagttcttcctcagagtcccggctagcacagaccagacagacagtgtccca
gacccaggagaggcggagctgctagccaaggccatcctactgtgtgttgacatagagggg
aggactcagaggtctggaggagagcagactactggtgtcagcggtgggatggactcgctc
ttacgccccctactggacacactgagcaggctccacactaatgtctacctgccgctacgc
aagactgacaagagcctgcagctgctgctacgactactgcagctcacaccagccagacac
acccctgctgcagtactgcagctcccaccagccagacacacccctgctgcagtactgcag
ctcacaccagccagacacacccctgctgcagtagagaaagaacaagaagacagtgtgacg
gtctccatggaaacgctggttctgggcgtggtggagcccattcaggagtttatcctccga
agactgagtggagaactacaggagctatgtgatgtagagcgtgctgagctctacctgtca
gtgctgaaggaggtggtgctgatgtacagtgtgttagagtggaaccactccaaggtacag
gaggcctatttccccagactcctcagatacgtcctgaggaccctagaagctgaccagatc
ccctctgtggcgggtcaggtgtccagggcggttgccatggcgtcgttggccatgacctgt
gaggttgcagcgttgggagtgttcaacctccaatcagagaccacaattctactggttcat
ctgtctagctacttctactcccctgctccacccccagcccctcctctctctctggtcaac
ttcaaccagaccctgctgaaacctccaactgcagctcagtcaacaggtgtttcagagcag
ggtcctctcctcaaggactggggccgtatggcagctcatttcatccgggaccagtggacg
tgcctgggatacgggaggagaataggcccacccgggcccctggagctccccagggcgtca
gggtccctccaggctgctatagaggctctgtctctgctgcccagtggcctggtactgcct
gtactggacttcatggcctccatgttgccacaggtggcgctgtctgaggaggccctgtgt
gtagaggctgtgactgtctcctggaagctggtgctgggactgagcagtaaccctcatgac
ttctggcccaccctgcagggctttgtgaccatggcctttcaccacagcctgctggagtta
acagaggagcaggcacctgggctcactgttactctacaacagatagccgttgagttgatg
gaactctcccaggccaagactggtgtattcaacgttctgatccaacactgctgccacacc
tggctgccctctgacccaggaagtgaaggccagagccaatcagatgccatgttctccagt
gccctactgcaccttgacatcctggctgaggcatgtgtgtatggacctgtgttcaggagg
gaccaaaggctgatccaggaggttcaggtctatgtggagaggcttggagaggagtgtgct
gctaacactgcagtccccagtgataaccgggatgaccagttcccacgtgtgtgtgtcgtg
gcgttcctcagccgcctccagccctccaatcagctgcatgagagactgatggaagaactg
gttctctgcttgcttaaaaaggatgaggccatatcgaagtcaaaacagcgttactatagc
aactccctgcagcatcgtgtcaagaacagggtgtggcagacactactgatgctgctgccc
aaactgagaggggagtttgtaggtaccgttctgggtcgtgtgtttgaggcaggtttcgtc
agtaaccaggcctcagtcaagtacctgatagagtggaagatggttctaatcctagtccag
tatcctgaacacatagaccgactctgggcctgcttcagtgtggatcaagagaagaccaag
accagtgtctgtaccttcctgtctgtgttggtccacctcaacatcatcatgcctcaactc
aaggagaaggcagtacagtggcgtaaggccctggatgttattctccagtggtgtttcagc
cataacttcagtgttcgtctgtacgccctgctggccctgaagagggtgtggggtctggag
gggcccgggggagcggatgggctcggggggctggccaccgtcgttaaggcctgtctgcac
caggctgaggctatgcagagtactggaaatgccaataagaactggagcaggatccaggac
cacttcttctttggtggctttcatcctgttagagactatagtgtggaaaccatattctac
acattccccagcctatcagaggtgtttgaggacgagtggattccgccctggaagtttgag
aagttggtggacttctcccagagtgcatctctcccgttgaggaaccctgtccctgacctg
agccagattcagcctggagactggatccagcaggataaaggggatcaggatggtgaggag
cgctgggccgaggtccagaagaagatgaccccctggaggttggggatccaggaacaggag
ccagagctgggtcttgtgccccagcagagagcagcacgcctgggcaagctgcacagtgcc
ctcctggtggttgcctcgctcatagacaagcccaccaacctgggaggtctgtgtaggacg
tgtgagatctttggggccagtgctctggtattggacagtcttcgccacgtcagtgataaa
cacttccaggccctgagtgtctcctctgagctatggctccccctactggaggtgaagccc
gtagaactagctgacttcttgcagctgaagaagagagagggctactgcattgtgggagtg
gagcagacagccaatagtcagagtctaaaggactacaagttccctgagaagactctgtta
ctgctgggtaatgagcgtgagggtatcccagctaacctgctccagctgctggatgtgtgt
gtggagatccctcagcaaggtgtcatccgttccctcaacgtacacgtgagcgccgccctg
ctggtgtgggagtacacccgccagtacctgcccactactggagtgaagtcagactga
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integrated database retrieval system
