Oncorhynchus mykiss (rainbow trout): 110512274
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Entry
110512274 CDS
T07259
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
omy01001
]
110512274
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
omy04054
]
110512274
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110512274
Protein kinases [BR:
omy01001
]
Serine/threonine kinases: Other
TAF1 family
110512274
Pattern recognition receptors [BR:
omy04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
110512274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
VapE-like_dom
nSTAND_NTPase5
AAA_16
LRR_14
RsgA_GTPase
nSTAND3
ABC_tran
AAA_22
DUF815
Motif
Other DBs
NCBI-GeneID:
110512274
NCBI-ProteinID:
XP_036829293
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MHGSYSGSYGGSCCVLTEGMETLDARQTGARMQDMDIMDLPPSLTPEVEDFLPELDLDGF
LEHEDFPFDFNDALFDLDFTVDIQTGEVAMPTAVAESGDQKQNCETQRELGDGQRKRGST
EAGDGQRKRETELGDGQRKRGSTEAGDEQRKRRSTEPGDRQRKRAKRRATEPVDGQRKRE
TQTDSPIRGCAGSPPLSAVTLSPPPPRLVQIAPSLLYIPGFGTATFVSSCSNGSELQLVQ
APVFGFSRSPTYILMSSPSLSPRTLDVLPLSPVDGEVAPDSMCSYPPGSLSDCASQALSP
PSASPLSPRTEEYIHQAKAHLRGMCQEMEAGLSLASHYVDVRLVQRQILIGSGKNTSKCL
EKDLVVIGDAERRRGSLARSQVFESSPGAKPKRSIVLLGNAGMGKSTLIKKLCVDWSDGL
LPQFDFVFLLDGKALTLPPEPTYSLRSLLLHLSCPHPRDVFNQVLSVPERVLVIFDGFEV
VRDLEGLLQSPADDSKGENYSVRQLFSGLLQRKLLPGCSLLLSARPRGTVSGLLRRADSL
LELSGFSPPDIERYLGQYFSGQSLEAPTSVPASDSIPVPNSVLAPVPDSVLASAPVSVPV
PVPVPVSVSVPVSVPASEEEEEEREEKREEEERERVEGEEEKEKEREEENRCVLSELSGL
AWQGVKGHSSLLTLTLDNTVCVKLRLFGLRTGLVHSHWLRGEQGRDGDGGGVSSDNILSW
AHPFLQSFLGGAHLSVSSCVSDRALLAQILPQPRGRRRPQGECLDLAQRFAVGLLFRNNA
ELWDLATLDTGAMKVVAAKRAAVISHLENLHHGDLSPARLLEACHCVYETGDIHLVRHLV
RNLPEVLSFQGVPLCPADAFVVWNLLDQCRTLRRRFCLGLEDTGLRMTGLKLLTGLNNIH
SYRACIADTITLWEELEQSGEEELLKAVVSKLTLNPFRATQVSHVQHLSTLVNIHTSRRL
SESQSDGVLGEGLPAVRDLHKLEFELGPVNGPLALPKLLELLPALHSLHHLDLENSKLGD
SGAEGLAGAVLSLSSLQIINLSQNCIGDQGIESLAPALSTLPSLHCLSLYSNVISDGGAE
SLAAVLPQMTSLSDLDIKYNSFTALGAQSLASSLRDCPWIKSLGMWNVCIPYGVLERLQQ
QDPRIQLL
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcatggatcatatagtggatcatatggtggaagctgttgcgttttaaccgaggggatg
gagactctcgatgcccgccagacaggtgccaggatgcaggatatggacatcatggatctg
cccccctcccttacacctgaggttgaagactttctgccagaattagacctggatggcttt
ctggaacatgaggattttccttttgacttcaatgatgctctgtttgacctggactttact
gtggacatacagacaggtgaggttgccatgccgacagctgtggccgagtcaggcgaccag
aaacagaactgcgagacacagagagagcttggtgacggacagaggaagaggggatcgaca
gaggctggtgacggacagaggaagagagagacagagcttggtgacggacagaggaagagg
ggatcgacagaggctggtgacgaacagaggaagaggagatcgacagagcctggtgacaga
cagaggaagagagcgaagaggagagcgacagagcctgtggacggacagaggaagagagag
actcagacagactctcccatcagaggctgtgctggctctcctcccctctcggccgtgact
ctctctcctcctcctcccagacttgtccagatcgctccttctctcctttacattcctggg
tttgggactgctactttcgtctcttcgtgtagcaatggctcagagctgcagctggttcaa
gcccctgttttcggcttctcaagatctcccacctacatactgatgtcttctccctcgctg
tctcctagaaccctcgacgtcctacctctctctccagttgacggtgaggtagctccagac
tcgatgtgttcgtatcctcctgggtctctgtctgactgtgccagccaagccctgtctccc
ccctctgcctcccccctctcccccaggacagaggagtacattcaccaagccaaggctcac
ctgaggggaatgtgccaggagatggaggcgggccttagcctggcgtcccactatgttgac
gtgcgattggtccagaggcagatcctgattggctcagggaagaacaccagcaagtgcctg
gagaaagatttggtcgttatcggagacgcggagaggaggcggggctcgttggccaggagt
caggtgtttgagagctcccccggggcaaaacccaaacgttccatcgtgttgctaggcaac
gccggcatgggcaaaagcacgctcatcaagaagctctgcgttgattggtccgacggcctc
ctgcctcagtttgactttgtgttcttactggacggtaaggctctgaccctcccccccgag
ccgacctatagcctacggtccctcctcctacacctctcctgcccccacccacgggatgtc
ttcaatcaggtcctctctgtcccggagcgtgtgctggtgatattcgatggcttcgaggtg
gtgcgtgacttggaggggctgcttcagtctccagcggatgacagtaaaggggagaactac
agcgttagacagctgttctcaggtctgctccagaggaagctgctaccaggctgctctctg
ctcctctctgcccgaccacgaggcaccgtcagtgggctgctgagacgggctgacagcctc
ctggaactctctggcttctcccctccggacatcgagagatacctgggacaatacttctct
ggacagtccctagaggccccaacctcagtcccagcctcagactcaatcccagtcccaaac
tcagtcctagcaccagtcccagactcagtcctagcctcagccccagtctcagtcccagtc
ccagtcccagtcccagtctcagtctcagtcccagtctcagtcccagcctcagaggaggaa
gaggaagagagagaggagaagagggaggaggaagagagagagagggtggagggagaggaa
gagaaagagaaagagagagaggaagagaacaggtgtgttctgtcagagttgagcggtctg
gcttggcagggggttaaaggtcattcatctctcctgaccctgactctggacaataccgtc
tgtgtcaagctgcggttgtttggcctgaggactggacttgtccattctcactggctgagg
ggggagcagggcagagatggtgacggtggcggcgtgagttccgacaacatcctgtcctgg
gcccaccctttcctgcaaagctttctgggcggggcccacctgtccgtctccagctgtgtg
tctgaccgcgctctgctggcccagatactaccacagcccagggggaggcgacggcctcag
ggagagtgtctggaccttgctcagagattcgctgtcgggctgcttttccggaacaatgcg
gaactctgggatctggccaccctggataccggcgccatgaaagtggtggcggccaagcga
gccgctgtgatatcacacctggagaaccttcaccatggcgacctgagccccgctcggctc
ctggaggcgtgtcactgcgtttacgagacaggcgacatccacttggtcaggcacctggta
cggaaccttcccgaggttctgtcgttccaaggggttccgctgtgccccgccgacgccttc
gtagtgtggaaccttttggaccagtgtagaacgctgaggaggaggttctgtctggggctg
gaggacacaggactgaggatgacaggattaaaactactgacgggtctcaacaacatacac
tcatacagggcgtgtatcgctgacaccatcactctgtgggaggagctagagcagagtggg
gaggaggagcttctgaaagcggttgtgtccaagttgacccttaaccctttcagagccaca
caggtgtcccacgtccaacacctgtccacactggtcaacatacacacaagcaggagactg
tctgagagccaatcagatggtgtcctgggggagggtcttcctgcagtcagagatctccac
aagctggagtttgagttggggccagtgaatggtcctctggcgctccctaaactcctggag
ctgctgccagccctgcacagtctacatcacctggatctggagaacagtaaactgggggac
agtggggctgaggggctggctggagctgtgctgtctctctcctctctgcagattatcaat
ctgtcccagaactgtataggagaccagggaatagagagtctggctcctgctctgtctacc
ctcccctcgctgcactgtctcagtctgtacagtaatgtgatatctgacgggggtgctgag
agtctggctgctgttttacctcagatgacatcactcagtgacctggatatcaagtacaac
agtttcacggccctgggagctcagagtctggcttccagtctgagggactgtccgtggatc
aagagtctggggatgtggaatgtgtgtattccctacggagtgttagagagactgcaacaa
caggacccacggatacagctgctctag
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integrated database retrieval system
