Oncorhynchus mykiss (rainbow trout): 110512628
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Entry
110512628 CDS
T07259
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110512628
04020 Calcium signaling pathway
110512628
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110512628
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110512628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Cornifin
Motif
Other DBs
NCBI-GeneID:
110512628
NCBI-ProteinID:
XP_036828014
LinkDB
All DBs
Position
Unknown
AA seq
2453 aa
AA seq
DB search
MTDGEGRVRFLYTPTPSTPTPSTPTPTSSTPTPNLTLTPALNVQQGGEERRCRDGEVRVL
IPAPFYREHNPPRRHRHDISFPDDDEDEEDEGGSSTWSPGPEEEEEEEEGAGVAARRVPG
PPVVVTGGTSGGGVFGNVRREQVTEPVTEPVESVDLLSEEEEQQPYPALAPVVFFCIKQT
TRPRSWCLRTVCNPWFEHVSMIVILLNCVTLGMYQPCEDVTCQAEWCLILQVFDDCIFAF
FAVEMVIKMVALGIFGSKCYLGDTWNRLDFFIVMAGMMEYSLDGHNASLSAIRTVRVLRP
LRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFMGEDF
RTLYNLSLSVYYQPEESEEDPFICSAIRENGMLRCHDVPPYSEGGAECSLPAPSLGGEGG
ARDGCVNWNQYYNVCRPGNVNPHKGAVNFDNIAYAWIAIFQVITLEGWVDIMYYVMDAHS
FYNFIYFIFLIIVGSFFMINLCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSE
PGSCYEEMLRYVSHLYRKLTRRVQRMYTTWHSKRHKKVNPNGGGSGPGVGRRTSGNAPWL
RPVHNLLQHHQRHHCRHSNGGHTPVATGGEELEMRSLPVPGRDPSVTPGLGSSLLGRLNG
GMNYPTILPSFVCSYRNFTPTDPHNPLPSHPHKPLPTQPHIPTHPHKPLPTHPHNPLPTN
LHSPFPTYLHGPHPTQPHIPLPTHPYSPLPRHPHSPQPTQPHIPLPTQPQRPLPTQPSPL
SENSPDPLSKLHQLMGQHSRPRLLYQLAGVVPSPLLLELLGCPLCARALEGMELDLSDLE
GSRGEAHTLHDFPQGGEGRGGRGRRRRKAGLGAGLGLGVKRASNRLLELGTAFRDRLKRI
VDSKYFNRGIMTSILINTLSMGIEYHQQPVELTDILEISNIVFTCMFLLEMMFKLLAFGL
FGYIKNPYNIFDGIIVIISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLM
KTMDNVATFCTLLMLFIFTFSILGMHLFGCKFNQQMENGDTIPDRKNFDSLLWAIVTVFQ
ILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRADS
DDDKRSDDDGEEEKKENVGELKDTELKMYSLMMTANGHADRNTLAPPITITRTAATPVPT
PKSSLGPDSVLGEGLVYGDVCSDFGYSRRGSAAASIDPYDQRSLSSPGQHSPLPPRGQGS
VSGWGSRRSSWNSLNRASSLKRSKTSGERESLLSGEGGGEEEEGSLELLQVSSLGPSVTG
EYGDCNGRSLHHMTYDPNKDLSPDDDMEEDNLWFRVRRTLQSHKPRWCREHEDWNLYLFS
PQNSFRVWAKGMISHKMFDHVVLLFIFLNCITIALERPGILPHSTERVFLSVSNYVFTVI
FLAEMTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDILVSLALTGGNRILGILRVL
RLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFTVFGILGVQLFKGKFYL
CEGLDTRNITTKSDCLLANYRWTRRKYNFDNLGQALMSLFVLSCKDGWVNIMYDGLDAVG
VDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEQRLREEKRL
KILEKKRRSKEKDGAEAQQRPYYADYSPVRLTIHTLCTSHYLDLFITIIIGINVVTMSME
HYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRWNQLDLAIVLLSIMGIT
LEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLGLLFM
LLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDT
LRECRPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMD
AEIALEMERARRLSSTSKASALGGAYVGPRPHSPGQEEEGQCSQEEELLSPRKMSVSRMH
SLPNDSYMFPPVRSASAPYPLQEHSSPLHQASGSVTSVHSQPCEDQAVLPGLPHPVPPHI
APPRPSPRGLRRQVAVKVDSVEVQSVSSVDRQDPLSTLRLLSPSRPPSPPFLSDPADEEV
WHITSSARHWWDRHGSGRCHSLSPYASPDSPPSLRSRGSALSLLGAGLQAHDPRKGFSVD
TQGFLDKPRCPDDQRRHSIEICPSPPEDRLLGEVDGEERRPRGQGSEVRGHRKKRMSPPC
ISIHPPCDPAGRAPSEPQADCNPLLRRRTPSYDVADAHTPTHRLTPTHTPTHRLTPTHTP
TLTPTHHHTLVQTLLHAVTHTPTHTHTLIRTHTLPHSHTHTPSPTHTLSLNSDARPSSLY
SDYKPLPHVTFDQPEHRYTSGMSAGLSSNEPATSPSHFNSRAGFSSMNRRTAQ
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtccgcttcctctacacccccaccccctctacccccacc
ccctctacccccacccccacctcctctacccccacccccaacctcaccctcactcctgcc
ctcaacgtccagcagggaggggaggaaaggcggtgccgtgacggagaggtgagggttctc
ataccggctccattttaccgggaacacaaccccccgagacgtcaccgccacgacatcagc
ttccctgatgatgacgaggacgaggaagacgagggaggcagcagcacatggagtccaggg
ccggaggaggaggaagaggaggaggaaggtgcaggagtagctgcccgtcgtgtcccgggg
cctcccgttgttgttaccggcggtactagtggtggtggtgtgttcggtaacgtgaggagg
gagcaagtaacggagccggtaacggagccggtagagtcagtggacctgctgtctgaagag
gaggagcagcagccatatccagccctcgcccccgtagtcttcttctgcatcaaacagacg
actcgtcctcgcagctggtgtctacgcacggtctgtaacccgtggtttgaacacgtctcc
atgatagtgattctcctgaactgtgtgactctggggatgtaccaaccctgtgaagacgtc
acctgtcaggcagagtggtgcctcatactacaggtgtttgacgactgtatctttgcgttt
ttcgcggtggagatggtcatcaagatggtggctctggggatcttcggttctaagtgttac
cttggcgacacctggaaccgactggacttcttcatcgtcatggcagggatgatggagtat
tctctggacggacacaacgccagtctgtcagccatcaggaccgtacgcgttctgcggccg
ctccgggcaatcaacagagtccctagtatgcgtatcctggtgactctgctcctagacact
ctccccatgctgggtaacgtcctgctcctctgtttcttcgtcttcttcatcttcggcatc
gtcggcgtgcagctgtgggcggggctactgagaaacaggtgcttcatgggagaagacttc
agaacgctctataacctgtcattgagtgtgtactaccagccggaggagagcgaggaggac
cccttcatctgctcagcaattcgggagaacggaatgttgcgttgccatgacgtcccgccc
tacagcgagggaggggccgagtgctcgctgcccgcgccctctcttggtggggaaggcggg
gccagagacggctgtgtgaactggaaccagtactataacgtctgtcggcccggcaacgtc
aaccctcacaaaggagcagtgaactttgacaacatagcctacgcatggatagccatattc
caggtgataaccctggaaggctgggtggacatcatgtactacgttatggatgctcactcc
ttctacaattttatatattttatattcctcatcatagtgggctctttcttcatgatcaac
ctgtgcctggtagtcatagcgacccagtttgcggagacgaagcagcgtgagaacgcgttg
atgcgcgagcagcgagcgcgttacatgtccaacgacagtactctggccagctacagcgaa
ccgggatcctgctacgaagagatgctgagatacgtttcgcacctctaccgcaaactgacc
cgacgagtacaacgcatgtacacaacctggcacagtaagcgtcataagaaggtgaaccct
aacggaggaggaagtggtccgggggtcggccgcagaacgtccggaaacgccccgtggctc
cgccccgtacacaacctgctgcagcatcaccagcgccaccactgtcggcacagcaacgga
ggacacacccccgtagcaacaggtggggaggagctggagatgaggtcacttcctgtcccg
ggtcgtgacccctctgtgacccctgggctggggtcgtctctcctgggtcgtctgaacgga
gggatgaactaccccaccatcctgccctccttcgtctgcagctaccgcaacttcaccccc
acagaccctcacaaccccctcccctcacacccccacaagcccctccccacacagcctcac
atccccacacacccccacaaacccctccccacacacccccacaaccccctccccacaaac
ctccacagtcccttccccacatacctccacggcccccaccccacacaacctcacatcccc
ctccccacacatccttacagccccctccccagacacccccacagcccccaacccacacaa
ccccacatacccctccccacacagccccagaggcccctccccacacagccctcgcccctc
tcagaaaacagtccggaccccctcagcaagctgcaccaactcatgggacagcacagccgt
cctcggctgctgtaccagctggctggcgtggtgccctcccctctcctcctggagctgttg
ggctgcccgctgtgtgcccgcgccctagagggcatggagctggacctgagcgacctggag
gggtctaggggagaggcccacacccttcacgacttcccccagggaggagaggggcgcggc
gggcgtgggaggcgccggaggaaggcagggctgggggcagggctggggctcggggtgaag
agggccagtaacaggctgctggagctggggacagcattcagagacagactgaaacgcatc
gtagacagcaagtacttcaacagagggatcatgacctccatcctcatcaacactctcagt
atggggatagaataccatcaacagccggtggagttgactgatatcctggagatcagtaac
atcgtgttcacctgcatgttcctcctggagatgatgttcaagctgctggccttcggtctc
ttcggctatatcaagaacccctacaacatctttgacggtatcatcgtcatcatcagtgtt
tgggagatcgttgggcaggcggacggcggtctgtcagtcctgcgtaccttccgtctgctg
cgggtcctgaagctggtccggttcctgcccgccctgcgcagacagctggtggttctgatg
aagactatggacaacgtagccaccttctgtacactgctcatgctcttcatcttcaccttc
agtatcctaggcatgcacctgtttgggtgtaaatttaatcagcagatggagaacggagac
accatcccagaccgcaagaactttgactcgctactctgggccatcgttactgtgttccag
atcctgactcaggaggactggaatgtggtcctgtataacggcatggcctccacctctcct
ctcgctgctctctactttgtggctctgatgacgtttgggaactacgtcctcttcaacctg
ctggtggccatcttggtggagggcttccaggctgagggtgatgccaaccgggcggactct
gacgatgacaagaggtctgatgacgatggagaggaggagaagaaggagaatgttggagag
ctgaaagacacagagctgaagatgtattctctgatgatgacggccaacggtcacgcggac
cgcaacactctggcccctccaataaccatcacgcgcacggcggcgacacctgtgccgacg
cccaagagctcattgggccccgattccgttctgggggaggggctggtgtatggagatgtg
tgttcagacttcgggtactctcgtcgcggcagcgctgctgcttccatagacccctacgac
cagcgctctctgtccagccccggccagcactcgccgctccctcccagaggtcagggttca
gtcagtgggtggggcagcaggaggtcaagttggaacagcctcaaccgcgcctccagcctc
aaacgcagcaaaaccagcggagagagggagagtctgctctcaggggagggaggaggggag
gaggaagaggggtccttagagctgctacaggtgtcctctctgggcccatctgtaacaggg
gagtacggggactgtaacgggaggagtcttcatcacatgacctatgaccccaacaaggac
ctttcacctgacgatgacatggaggaggacaacctgtggttccgggtcaggagaacgctg
cagagccacaagccacgctggtgtagagaacatgaagactggaacctctacctgttctcc
cctcagaactcgttccgtgtgtgggctaaggggatgatctctcataagatgtttgatcac
gtggtcctcctcttcatcttcctcaactgtatcaccatcgctctggagaggcccggcatt
ctgcctcacagcaccgagagagtgtttctgagtgtctccaactacgtgttcactgtcatc
ttcctggctgagatgactgtcaagattgtagcgttggggttctgctggggtaaacagagc
tacctgaagagcagctggaatgttctggatgggatcctggtgtttgtctctctggtggac
atccttgtttctctggccttgactggagggaaccgcatcctgggaatcctcagagtacta
cgactgctacgcacactaagacctctcagggtgatcagtcgagccccagggctgaagctg
gtagtggagactctgatcacgtctctgagacccatcgggaacatcgtcctcatctgctgc
gctttcttcactgtgtttggaatactgggagtacagctgttcaagggtaaattctacctc
tgtgaaggcctggacaccagaaacatcaccaccaagtcagactgtctgctggccaactac
cgctggacacgcaggaaatacaacttcgacaacctgggacaggcgctgatgtctctgttc
gtgctgtcctgtaaggatggatgggtcaacatcatgtatgatggcctggatgcagtggga
gtagaccagcagccggtgaggaaccacaacccgtggatgctcctctacttcatctccttc
ctcctcatcgtcagtttcttcgtcctcaacatgttcgtgggcgtggtcgtcgagaacttc
cacaagtgtcgtcaggaccaggaagaggaagagcagcggctacgggaagagaagaggctc
aaaatcctggagaaaaagcgcaggagtaaggagaaggatggtgccgaggcccaacagaga
ccctactatgcagactactcccccgtgcgtctcaccatccacacgttgtgcaccagccac
tacctggacctcttcatcaccatcatcatcggcatcaacgtcgtcaccatgagcatggag
cattacaaccagccacagtatctggaggaggctctgaagtactgtaactacctgtttacc
tgtatcttcatcatcgagaccctgctgaaactagtggccttcggactgcacaggttcttt
aaagacaggtggaaccagctggacctggccatagtgctgctgtccatcatgggcatcact
ctggaggagctgaagatgaacgcatcgctacccatcaaccccaccatcatcaggatcatg
agagtcttgaggatcgctagagtgttgaagctgttgaagatggctacagggatgagagct
cttctggacacggtcatgcaggctttgccacaggtggggaatctgggtctgctcttcatg
ttgctgttcttcatctacgcagcactgggagttgagctgtttgggaaactggagtgtaac
gacagtaatccgtgtgagggtctgagtcgccacgccacctttgagaactttgggatggcg
tttctcacgctgttcagagtctctactggggacaactggaacggcatcatgaaggacacg
ctgcgtgagtgtcgtccagaggagcgctcctgtctgacctaccttcctctgatgtctccg
gtttactttgtgaccttcgtcctcatggcccagttcgtgctggtcaacgtggtggtggcg
gtgctgatgaaacacctggaggagagcaacaaggaagccaaggaggacgcagagatggac
gccgagatcgcgctggagatggagagagctagacgtcttagctccacctctaaagcgtcg
gcgctaggcggggcctacgtggggccacgcccacactcacctggtcaggaggaggagggt
cagtgcagccaggaggaggagcttctgtccccaaggaagatgtccgtatccaggatgcat
tctctccctaacgacagctacatgtttcctcctgtacgatctgctagcgccccctaccct
ctacaggaacacagcagccccctgcaccaagcctcaggctctgtgacatcggtgcactcc
cagccatgcgaagaccaggctgtactgcccggcctccctcaccctgttccccctcacatc
gccccgccaaggccctcgcccagggggctgcgtagacaggtggctgtgaaggtggactcg
gtggaggttcagagtgtttcctcagtagacagacaggaccccctctcaaccctccgcctg
ctctccccctctcgtcccccctctccccccttcctctcggatcccgccgacgaggaggtg
tggcacatcaccagctcagcgcgccattggtgggacagacatggaagtgggcggtgtcac
tccctctccccctacgcctcccccgactccccaccctccctgaggagccgagggagtgcg
ctcagcctgctgggggcggggctacaagctcacgacccgaggaagggcttcagcgtagac
acccagggcttcctggataaaccccgttgtcctgacgaccagcgacgacactccatcgag
atctgcccgtcccctccggaggaccggcttctaggggaggtggacggggaagagaggagg
cccaggggtcagggttcagaggttagaggtcacaggaagaagaggatgagcccaccttgc
atctccatccaccccccgtgtgacccagcaggccgcgccccctcggagccgcaggcagac
tgcaacccgctgctgagacgcaggaccccctcctacgatgtcgccgacgcacacactccc
acacacaggctgacgccgacacacacacctacacacaggctgacgcctacacacacacct
acactaacgccgacacatcaccacacactcgtacagactctccttcacgcagtaacacac
accccgacacacacacacactcttatccgtacacatactctacctcattcacacacacac
actccgtcccccacacacaccctgtccctgaactccgacgcgagaccttcctctctctac
agtgactacaagcccctcccacatgtcaccttcgaccaaccggagcacagatacacgagt
ggcatgtccgctggcctatcgagcaatgaaccagccacaagtccctcgcactttaacagt
agggcggggtttagctcgatgaacaggagaactgcccaatga
DBGET
integrated database retrieval system
