KEGG T07259: 110512931

Oncorhynchus mykiss (rainbow trout): 110512931

Entry

110512931         CDS       T07259

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

omy Oncorhynchus mykiss (rainbow trout)

Pathway

omy03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:omy00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110512931
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omy03021]
    110512931
   03019 Messenger RNA biogenesis [BR:omy03019]
    110512931
Transcription machinery [BR:omy03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110512931
Messenger RNA biogenesis [BR:omy03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110512931

SSDB

Motif

Pfam:

zf-CCCH Torus zf_CCCH_4 zf-CCCH_3 zf-CCCH_2 zf-CCHC zf-CCCH_12 zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-CCHC_3 Nab2-like_zf-CCCH_ zf-C3H1

Other DBs

NCBI-GeneID:

110512931

NCBI-ProteinID:

XP_036828175

LinkDB

Position

Unknown

AA seq 277 aa
MQDLLATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICMNYLVGFCPEGRSCKFMHPRFELPMGATEQPP
LPAQILGHQKPLPSLGRSSLSLIQLTNPGGGAGPHQHQHHQRQPYSSGPSMHQHHNNMGG
GNRGPRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ

NT seq 834 nt +upstreamnt +downstreamnt
atgcaggacctgttagccaccgtggaccacatcaagtttgatctagagatagctgtggag
cagcagctgggggctcagcctctccctttccccgggatggacaagtccggggctgctgtg
tgtgagttcttcatgagagcagcctgtctcaaaggtgggatgtgtccgttccggcacatc
agtggggagaagacggtggtgtgtaaacactggctcagaggactctgtaagaagggagac
cagtgtgagttcctacacgagtacgacatgaccaagatgcccgagtgttacttctactcc
aagttcggagagtgcagtaacaaggagtgtccgttcctccacatcgacccagagtctaag
atcaaagactgtccctggtatgacagaggcttctgcaaacatggtccagactgtagacac
cgccacaccagaagagtaatctgtatgaactacttggttggtttctgtccagagggccgg
tcctgtaaattcatgcacccgcggtttgagctgccgatgggagccacagaacagcctcct
ctaccagcacagatactgggtcaccagaagccgttgccttcgcttggccggtcgtccctg
tcactcatccagctgaccaatcctgggggaggtgcaggtcctcaccagcatcaacaccat
caacgccagccgtactcctctggtcccagcatgcatcagcaccacaacaacatgggagga
gggaacaggggtccacgcccactagaccaggtcacctgctacaagtgtggtgagaagggc
cactatgccaataaatgcaccaaaggacacctggccttcctcagtggacagtaa

DBGET integrated database retrieval system