Oncorhynchus mykiss (rainbow trout): 110512986
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Entry
110512986 CDS
T07259
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
110512986
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omy01009
]
110512986
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110512986
Protein phosphatases and associated proteins [BR:
omy01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110512986
Cell adhesion molecules [BR:
omy04515
]
Cadherins
Protocadherins
110512986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
7tm_3
MAP17
DUF6377
EphA2_TM
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
110512986
NCBI-ProteinID:
XP_036807372
Ensembl:
ENSOMYG00000039360
LinkDB
All DBs
Position
18:complement(3745732..4296638)
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AA seq
1236 aa
AA seq
DB search
MDLTDFYLLAALVACFWMDPSIAQELIYPIREELQENVLIGNIPKDLNVSHTNAATGASA
NLVYRLVSKAGDNPLLRVQSSTGEIFTTSNRIDRERLCPGPSFEENECSFEIEVVILPND
YFRLIKIKIVVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYQL
VNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGMPQKSSTAILQVT
VTDVNDNKPVFRENQIEVHIPENSPIGTSVVQLQATDADVGANAEIKYMFGTQVSPATKR
LFALNGTTGLITVQRPLDREETAIHKLSVLASDGSSSPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDFEGTKEYNFKIIASDSGKPSLNQTALVRVRLEDENDNSPIFSHPVIELAVVEN
NKRDLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
VTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVTLSILSDNENFILDPYSGVIKSNVSFDREQQSSYTFDVRAVDSGRPPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
TKGLFRIDPVTGNITLEEKPAISDIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNA
TFIYDLIRRTMETPLDRNIGESSETYQSGDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHT
SRFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDPAHEPIN
GNISLPAELEEPGHFDWNAAPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKHHM
IQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGSVHPSRQGTLTGTLTRA
RTELNPEYLDLRSRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPTLLSC
PLPLVQGQAQEDFYQQASSDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPTLGSYSQPKSPVSNFATQKEWAKEKLLNGHTTLTRTWKTDSGRDQFCDKKQFGS
GEGHFSTSGHMADIPLASLKSYQPTTGPDSSKEHQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggatctaacagacttttacttgttggctgctctcgttgcctgtttttggatggaccct
tctatagcccaggaattgatctatcctattagagaggaactgcaggaaaacgttctcatt
ggaaacataccgaaggacctgaacgtctcgcatacaaacgctgctaccggagctagcgct
aacctggtctacaggctggtgtctaaagccggcgacaaccctctgctcagagtgcagagc
agcacgggagagatatttacgacctccaatcgcatcgacagggagaggctctgtcccggc
ccctcgttcgaggagaacgaatgctccttcgagatcgaggtggtgattttacccaacgac
tacttcagattgataaagattaagatcgtagtcaaggacaccaacgataatgctcccatg
ttcccgtctcccgtcatcaacatctccatcccggagaacacgctgatcaacagtcgtttc
gccatcccctccgccaccgaccccgacaccggccccaacagtgtacacaagtaccagctg
gtgaacgggcaaagcgccttcgggttggacatcgtagagacgcccgagggggagaagtgg
ccgcagctcatcgttcagcagaacctggacagggaacagaaggacacgtacgtcatgaag
atcaaggtggaggacggcggcatgccacagaaatccagcaccgccatcctccaagtcacc
gtcacagacgttaacgataacaagccggtgttcagggagaaccagatcgaggtccacata
ccggagaactcgccaatagggacgtccgtagtccagctacaggctacggacgcagacgtc
ggggcgaatgccgaaatcaaatacatgttcgggacgcaggtgtccccagctaccaagaga
ctatttgctttaaacggcaccactggccttataactgtacagcgacccctcgatagagag
gagaccgccatacacaagttatccgtgttagcgagcgacggcagctccagcccagccaga
gctaccgtaactataaacgtgacggacgtgaacgacaatccgccaaacatcgatctgaga
tatatcatcagtccaataaacggcaccgtgttcctctcggagaaagacccaatcaacacc
aagatagctttgatcaccgtgtcggacaaggacacggacgtcaacggcaaggtcatctgt
ttcatcgagaaggatgtcccctttcacctcaaagcggtgtacgacaaccagtatctacta
gagacgtcggcgctgctcgactttgaggggaccaaagagtacaacttcaaaatcatagcc
tccgactctggcaagccgagcttgaaccagacagcgttggtaagggtgaggctggaggat
gaaaatgacaactcgccgatcttcagccatcctgtcatcgagctggccgtcgtggagaac
aacaaacgcgatctcttcctcacgactctcagcgccaccgacgaggacagcgggaaaaac
gcggagatcgtctaccaactgggccctaacgcctcgttctttgacctggaccgtaaaacc
ggtgtcctcacggcctcccgggttttcgatcgcgaggaccaggatcggttcctcttcacg
gtaacggcccgagacaacgggacgcctccactccagagccaggcggcagtcatcgtgaca
gtgctcgacgaaaacgacaacagccccaagttcacccacaaccacttccagttctttgtg
tcagagaacctgcccaagtacagcacggtgggtgtgataactgtcacagactcagacgcc
ggggaaaatgccgccgtcacgctttcgatactcagcgacaacgagaactttatcctagac
ccgtactctggagtaataaagtccaacgtgtcctttgaccgggagcagcagagctcctac
accttcgacgtccgggcggtggatagcgggcggcccccatgttcctcggccgccaaggtg
accatcaatgtcatcgacgtaaacgacaacacccccatcgtcatctaccctccttccaac
acctccttcaaactggtccccctctcgtccatccctggatcggtggtggccgaggtcttt
gctgtggacggtgacacagggatgaacgcagagctcaagtacaccatcgttagcggcaac
accaaaggtctgttccggatcgaccctgtgacaggaaacattaccctggaggagaagcct
gctatctccgacatcggcctccatcggctggtcgtgaacattagcgacctgggctaccct
aagtccctgcacaccctggtgctggtgttcctctacgtgaacgacacggtcggcaacgcc
acgtttatctacgacctcattcgccgcaccatggagacgcccctggacaggaacatcggg
gagagcagtgagacttaccagagcggagattatctcaccatcatgatcgccatcgtagcc
ggggcgatggtggtgattgtggtgatcttcgtgacagtcctggtgcgctgccgtcacacc
tcgcggttcaaggcggcccagagaaagaagcagggcgctgagtggatgtctcccaaccag
gagaacaagcagaacaagaagaagaagcgtaagaaaaggaagtcgcctaaaagctccctc
ctgaactttgtcaccatcgaggagaacaagccggacgacccggctcacgagcccattaac
ggcaacatcagcctgcctgccgagctggaggagcctggccactttgactggaacgctgct
ccaacgaccaccttcaagccctccagtccagacctggcaaggcactacaagtccgcctct
ccgcagtccgcgttccacctcaaagcggacacgccggtctccgtgaagaaacaccacatg
attcaggagctccctctggacaacaccttcgtagggggctgtgatactctctccaagaga
tcctccactagttcagaccacttcagtgcctcggagtgcagttcccagggaggattcaag
actaagggatccgtacacccgtccagacagggaacgctaacaggaacgttaacccgcgcc
cgaaccgaactgaaccctgagtacttggacctccgctccagggccgagctcaacccagaa
tactggaccccatgcacacctctatcgcagcgccgcgtcacctttcacctaccagacggt
tctcaggagagctgcagtgacagtgggctgggggaccacgagcccacgctcctctcatgc
cctctccctctggtgcagggccaggcgcaggaagacttctaccaacaggcctcctcggac
aagaggaccgaagccgacggaaactctgaccccaactctgatggccccctgggacccaga
ggcctagtggaagctacagagatgtgtacccaggagtgtttggtgcttggccactctgac
aactgctggatgccccctaccctcggctcctacagccagcccaagtctccagtgtccaac
ttcgccacccagaaagagtgggccaaagagaaactgctcaacggccatactacgttgacc
cggacctggaagaccgatagtgggcgggaccagttttgtgacaagaagcaatttggcagc
ggggagggacacttcagcaccagtggccacatggctgacatcccattggctagtttgaaa
tcctaccagcctaccactggcccagactcttcgaaggaacaccagctataa
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