Oncorhynchus mykiss (rainbow trout): 110513555
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Entry
110513555 CDS
T07259
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110513555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110513555
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110513555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
110513555
NCBI-ProteinID:
XP_036828811
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MSAEEAADKTAPADASAGDGGDEEEEWLYGDDDERADEEEAKLSAAVSAPIPATESEEAA
TTGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTVGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDTW
KGYCDKQKRLRMGLEVVNISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTTANIYKSS
MNTTRISPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVISE
HSSSDAEQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPGFP
PPSGPPPSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWPPMM
DQSKQWDYYPPGPGPGPGPRREDKREKERERPRERPHEREREREHSPSTMAYNSDEERYR
GYREYQAERGYSGGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGGGGGERHR
DRSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEP
SDDMGGDQENQDTME
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaaaacagccccggcggacgcgagtgcgggagatggc
ggagacgaggaagaagagtggctctacggagatgatgatgagagagctgatgaagaagag
gccaaactatccgctgctgtcagtgcacctattcctgctactgagtcagaagaggcagct
actacagggaacggagtggaagctcaggagaaggagccaggagatgatgacgacagcgat
agcgacagcgacgatgatgacgatgatgttcgtgtcaccatcggagacatcaagaccgga
gccccacagtacacaacatatggagtggctcctgtcaacctgaacataaagacagcggga
gccagaccctatggaacagtagggaacaagttaaagggtgtggatctggaggccccggga
aacatcaatggagtcccagtagtggaggtggacatggagacattcgaggagaaaccctgg
aggaaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacgtgg
aagggctactgtgacaagcagaagaggctgaggatgggcctggaggtcgtcaacatctcc
tccaccaccagcaaaatcactgttcagcagggcaggacggggaatgagaaggaagtgagt
ttacccatccacacgtccaaacctgacttccccactacagccaacatctacaagtcatcc
atgaacactaccaggatctcccccccacagtggactgctccccccgtccaggacatgtcc
tactatacgaagaccagtggtacgatcgacgtgattggaggagggaccgctaccatcagc
agagtggagggacgacgaagacacaacctggagggaaacaacatccaggtgatttcggaa
cactcgtcgtcggacgctgagcaaaaccccaacaagatgccccccttcttcccccccggg
cccctccccccaaacatccctcctcccccattccttccccctcctcccaacgtcagccag
gctccccctctcatccccccaccaagaatacctatgaatgtccctcctcctggtttccct
cctcccagcggcccccctccctctctcatccccaccttggacagcagtgggcatccaggt
ggatatgatgttcgtcccgttccaccataccccttccccacaggtggtttccctcctcct
atgacaggtggctaccctcctcctatgccaggtgtggtgtctccatggcctcctatgatg
gaccagtctaaacagtgggactactaccctccaggaccgggaccgggaccaggacccaga
cgggaggacaagagggagaaggagagagagagacccagggagagaccacatgagagggag
agagagcgagagcacagcccctccactatggcttacaacagtgacgaggagcggtaccgc
ggttaccgggagtaccaggcggagcgtggctacagcggcggtggtgaccgcggaggaggt
gaccgcggaggaggggagcgtggaggcgtagaccgtggaggtgaccgtggagggggggag
cgtggcggtgaccgtgggagtggtggtgaacgtggtggtggaggcggggagcgtcacaga
gacaggtcgagccgtgagaaggaggagagacacagagagagaagacacagagagaaggag
gaggggagacacaagtcatcacgcagtagcagcaggaggagacatgatagtgaagaagga
gacggtcacaggagacacaaacacaagaagagcaagaggagcaaggagggcaaggaacct
agtgatgacatgggaggagaccaggagaaccaggacaccatggagtga
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