Oncorhynchus mykiss (rainbow trout): 110514219
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Entry
110514219 CDS
T07259
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110514219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110514219
Membrane trafficking [BR:
omy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110514219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
WD40_CDC20-Fz
zf-RING_Vps41
TPR_VPS8_2
zf-RING_UBOX
zf-RING_5
zf_RING_Vps8_fungal
zf-RING_2
ANAPC4_WD40
zf-RING_11
EIF3I
Prok-RING_1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110514219
NCBI-ProteinID:
XP_036807384
LinkDB
All DBs
Position
18:6493403..6573608
Genome browser
AA seq
1356 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDTIDDKEFDIPQVDTPPTLESILNEPEDEEEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRKRKTVELSTTVHGSVLRHSILKGISAQIV
SAADKVDAGLPTAVTVSGVIVVGTSHGLALVFGKDLNQALRLCLGSTATGAEYGAVSALS
INHDCTRLLCGFAKGHITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELAFRRLMGMRTCESRCLFSGSKGEVCNVEPLLTAPDLKDHPITQYSLLAMASLTKI
LVIGLKPSLKVWMTFPYGKTDPTSVPQLAWQFVPVQKVVNPVLAFCRGDTVHFLLVKKDE
TGTIHVIKQRQLQLNCDIISLNWINSRTLVVMDSGEKLRVVDRPSQEELESLDVAEVQLV
YNSSHFKSLATGGNVSQALALVGEKACYQSVCSYTGQMVLLGTKSAHILTLRNWRERVDC
LLKQERFVEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMIEILFQYVERSVKKCPE
HGKIQIMEQHFQDMVPVMVDYCLQLQRTDLLFNQLYTRLVENCVARGVFLESLEPYIVSE
RLGCVTAPVMRDLLTHLQDNNMMDSVENCLIHLDITSLDIQQVVQMCWDNQLYDAMIYVF
NRGMNDYITPMEKLFQVIGPPLREGRALTDEQVVMGNKLLVYISCSLAGRAYPLGDIPED
LVSQVKNQVFEFLIRLHSAEAGQEEELYPYIRTLVHFDTPEFLNVLALVSTSLQTQLVSQ
HTLEDFKNDKQALEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNR
KLFDQVLEFLCSPDDDTRHTERQQVLLELLQVGGVIQFDEGRLLGLAEKAEFYQICEFLY
EQNHLYDKILDCYLRDPLRKEEIFNYIHNLLSMPGYSSEEKHCVWEKALLHIAELVTLDP
AKSADLVAMHFPEEVRPIITRLQDDHLVFQFLRCLLDQSATSREGPHPQPLLRLSPDLHE
LHIGLLCRFTPRQLTDFLKASQDYRLEEAVQITEQYQVHEATSYLLEKKGDSHGAFQVLL
KTLKDKLGAVTSEKRSEEEGETGREEESPLQRVEGSLGDIIALCHRSSQSLNQEQRGVLW
FPLLEAMMSPQKLLKGPDTRTTSEVLKELTMKVLNSMSSFIPLPAIIQRILQDPVYGKGK
LAEIQGLILGMLETFNYEQTLLETTTSLLNHDLHWSLSHLRAAVSRGLHPRQDHCNICLQ
QYRRRQDSPDDIIIFSCGHLYHCQCLQRKGSGHAEPRLLQVWSCYKCISSQRGRGGDRVT
TETGRGRSTSLAQTNVMSREAGEDGKKVRTVVGNLS
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatcaccagatacacgcagtttggtttctgcgtcatcccagctcaatttaatg
gaaatagatacgatcgacgataaagagtttgacattccccaagttgacaccccgcctaca
ttggagagcatcctgaatgagcctgaggatgaggaggagcccttcatcctggaggacacg
tgtctgctgaacacagagaacatcgacgcccactcctgtgagacctcctcactggccagc
tccgacagcggtgaccgcacacacctcaaacggaagaggaagacagtggagctcagcact
acagtccatggctctgtgctccgacacagcatcctgaaaggcatctctgctcagatagtc
tcagccgctgacaaagtagatgctggactgccaactgcagtaactgtgtctggtgtgatc
gtagtgggaacgtctcatggcctggctctagtgtttggaaaagatctgaaccaggctctc
cgtttgtgcttgggaagcacggcgacaggggcggagtacggagccgtctccgccctcagc
atcaaccatgactgcacccgcctgctctgtggcttcgccaagggacatatcaccatgtgg
gatctggccaatgggaagcttctgcgaaccattaccgacgcccacccacccggcaccgcc
atcttacatgtcaagttcaccgatgaccctacgctggcagtgtgcaacgacagcggtggc
tctgtgtttgagctggctttcaggaggttgatggggatgcgtacatgtgagtctcgttgt
ctgttcagtggctctaagggagaggtgtgtaatgtggagcctctccttaccgccccggac
ctgaaggatcaccccatcacacagtactctctcctggccatggcctctcttactaagatt
ctagtgatcggactgaagccttctctcaaagtgtggatgacatttccctatggcaagacg
gacccgaccagtgttccccagctggcctggcagtttgtccccgttcagaaggtggtcaac
cccgtcctggcattctgcagaggagacaccgtacacttcctgctggtgaagaaggatgag
accggaaccatccatgtcatcaagcaaagacagctgcagctgaactgtgacatcatcagt
ctgaattggatcaacagtcgtaccctagtggtgatggacagcggggagaagctgcgtgtg
gtggaccgacccagccaggaggagctggagagcttggacgtggctgaggtgcagctggtc
tacaacagcagccattttaaatcgctggcaacggggggaaacgtcagccaggcactggcc
ctagtaggagagaaggcctgctatcagtctgtctgcagctacacaggacagatggtgtta
ctggggaccaagtcagcccacatcctgactctgaggaactggagggagcgggtggactgt
ctgttgaaacaggaacgttttgttgaagctctgtccttggcctggtccttccatgagggc
accgccaaggctgtactggggctgtttggggacccagcgaagaggaaaggtgtagtggca
gacaagatgattgagattctgttccagtatgtggagcgctcagtgaagaaatgtccagaa
cacggcaagatacagatcatggaacaacatttccaggacatggtgcctgtcatggtagat
tactgtctgcagctgcagaggacggacctactgtttaaccagctgtatacccgcctggtg
gagaactgtgtggctcggggggtcttcctggagagtttggaaccctacatcgtgtcggag
cgtctgggctgtgtgaccgctcccgtcatgagagacctgctgacccacctacaggataac
aacatgatggacagtgtagagaactgtctgatacatctggacatcaccagcctcgacata
caacaggtggtccagatgtgttgggacaaccagctgtatgatgccatgatctacgtgttc
aacaggggaatgaatgactacatcacccctatggagaaactcttccaggtcattggcccc
ccgctgagagaaggcagggccctcacagatgaacaggtggtgatgggtaacaagctgctc
gtttatatcagctgctctctggcaggccgggcctatccactaggagacatcccagaggac
ctggtgtctcaagtcaagaaccaggtgtttgagttcctgatcaggctccactctgcggag
gcgggtcaggaggaggagttgtacccttacatcagaaccctggtccacttcgacacacca
gagttcctcaacgttctggccctggtctctacaagtctacagacacagctggtcagtcaa
catacgttggaggactttaagaatgacaagcaggctctggaataccagcagaggattgta
gacattttactgaaggtgatggtggagaacagtgacttcactccctctcaggtgggctgt
ctgtttaccttcctggcccgccaactggccaaacctgacaacacactcttcgtcaacagg
aagctcttcgatcaggttctggagttcctgtgtagtccagacgacgacaccagacacaca
gagagacaacaggtgctgttggaactgctgcaggtgggaggtgtgatacagtttgatgag
ggacgactactgggattggctgagaaggcagagttctaccagatctgtgagtttctgtat
gaacagaatcatctgtatgataagattctggactgctacctcagagaccctctgagaaag
gaagagatctttaactacatccacaacctgctgtccatgcctggctacagctcagaggag
aaacactgtgtctgggagaaggccctgctgcacattgcggagctggtgacccttgaccct
gccaagtcagctgacctggtggccatgcatttccctgaggaagtacgacccatcatcacc
agactacaggatgatcacctagtgttccagttcctgaggtgtcttttggaccagagtgct
acctccagggaaggccctcatccccagcctctcctaagactgagccccgacctgcatgag
ctccacatcggcctgctgtgtcgcttcactccccgacagctcactgacttcctcaaggcc
tctcaggactacaggctagaggaggccgtccagataacagaacagtaccaggtccatgaa
gctacatcctatctgttggaaaagaaaggtgattctcatggagccttccaggtcctgctg
aagacgctgaaggacaaactcggcgctgtcacctcagagaaaaggagtgaagaggagggg
gagaccgggagggaggaagagagtccactgcagagagtggaggggtcattgggtgacatc
atcgctctgtgtcacaggagctcccagagtctcaaccaagaacagagaggggtgctgtgg
ttccctctgctagaagctatgatgtcgccacagaagctgctcaagggaccggacacacgc
actacatcagaggtattgaaggagctcaccatgaaggtcctgaacagtatgagtagcttc
atccccctgcctgctatcatccagcgcattctacaggaccctgtgtatggtaaaggaaag
ttggctgagatacaaggccttattctgggtatgctggagaccttcaactatgaacagacg
ttactggagacgaccaccagtctgttgaaccatgacctccactggtccctgtctcacctg
cgagcggcggtcagcagggggctccacccccgtcaggaccactgtaacatctgcctgcag
cagtacaggagacgtcaggacagcccagatgacatcatcatattcagctgcggccacctg
taccactgccagtgtctgcagaggaaggggagtggccacgcggagcccaggttgctgcag
gtctggagctgctacaagtgtatctcctcacagagagggaggggcggggacagggtcacc
acggagaccgggagggggcgaagcacctccctcgcacagaccaacgtgatgtccagggaa
gcaggggaagatgggaaaaaggtaaggactgttgtgggtaacctctcatag
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