Oncorhynchus mykiss (rainbow trout): 110515322
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Entry
110515322 CDS
T07259
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110515322
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110515322
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
110515322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
110515322
NCBI-ProteinID:
XP_036812796
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All DBs
Position
21:11724426..11797595
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AA seq
823 aa
AA seq
DB search
MGCNLCSLQKREEHYKLLYEISQVNGRDYSKASHDEMVEVIRRDPIVVQVVRRHGNPAHS
HQTLQEVHMVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHTMEHEFYE
CPEYLSNTPAEVDRPEEFEYEQVELCRLNSQEKLGLTLCYRTDDEEDTAIYVSHVGPNSI
AARDGRIREGDRILQINGCDVQDRQEAFTLLSNEESRSIVLLVTRPEEAWLDEEHNELLE
ELKMEILEERRNEEVQKTGGGEEQAKQLEEDDVMTDTATCSSNTQDKDSGLGTGRNEESS
EQEVLLARVHRRPAQGLRDRWRAKHGQGLGRRVVVPSDTQGPRGLIQAQEGEGGVGLGLE
CDSRFKQLLELKCQIRNSGECGVYYSRRSTIECSLTEQSGVGVSGGGGMEQELRMLNDEL
RSIELECQSIMQAHQLRKNQRDPPCTPMCSPGRSPKHGREQHAKLADINEHPGERQWDSD
KLRGDKDSSSAYNTAESARSTPLGMERSPDHSLQRRISLTNQKNLRSTMAASGQSISIPI
PDRELLSETSTGTTTHSRQDPNPSPGTTVISSSPDQSNPSPSESDPALPADDERCDHTRS
HRGPRRVPPYPSPYHTAPQQGASPAHARHLQSYMQQLLQQTSSLETYSQSQLSLLSVCRD
RSTRPGEPRLEWKVKVRADGTKYVARRPARDRILRERALRIREERSGGMTTDDDTMSEMK
MGRYWSKEERKQQLARAREQRRRREYMQRSRLECLREGPGSGAEGRKEVNILELSHKKMM
KKRNKKILDNWMTIQELMSHGARAPEDQGTKQVHNAFLSVTTV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgctctttacagaaacgggaggaacactacaagctgctgtatgag
atttcacaggtgaatggcagggactactccaaggccagccatgacgagatggtggaggtc
atcagaagagaccccattgtggtgcaggtcgtccgtcgccatggcaaccccgcacactca
catcagacattacaggaagttcacatggtggacgtgtgcacgcagacggacatcactttt
gaacacatcatggccctggctaagctgaggcctgctactccacctgtacccgacatctgc
ccctttctgctgtcagacagctgtcactccatccacaccatggagcatgaattctacgag
tgtccagagtacctctccaacaccccagctgaagtggacaggccagaggagtttgagtat
gagcaggtagagctctgtcggctcaacagtcaggagaagttgggtctgacgctgtgctat
cggactgacgatgaagaggatacagctatctacgtcagccacgttggacccaacagcatt
gctgccagggacgggcgcattagggaaggagatcgaatattacagatcaatggctgtgac
gtacaggacaggcaggaagctttcactctcctgtccaatgaggagtccaggagtatcgtt
ctcctggtgaccagaccagaggaggcgtggctggatgaggagcacaatgaactcctagag
gagctgaagatggagatccttgaggagaggaggaacgaggaggtgcagaagacaggagga
ggagaggagcaggccaagcagctggaggaggatgacgtcatgacagacacggccacgtgt
tcctccaatactcaggacaaagacagcggcttggggacggggcgcaacgaggagagctcc
gaacaggaagtcctcctagcccgtgtccaccggaggcctgcccagggcctcagagaccga
tggagggccaagcatggccaggggctgggcaggagggtggtggtaccctcggacacccag
ggacccaggggtctgatccaagcccaggagggtgagggtggagtggggttaggactggag
tgtgacagccgcttcaagcagctcctggagctcaagtgccagatccgtaacagcggggag
tgtggtgtgtactatagcaggagaagcaccatcgagtgcagcctgacggagcagagtggg
gtgggggtcagtggtggtggagggatggaacaggagctgaggatgttgaacgatgagctg
aggagtatcgagctggagtgtcagagcatcatgcaggcccaccagctccgtaagaaccaa
agggatcccccctgcacccctatgtgctccccaggacgaagccccaaacatgggcgtgag
cagcatgccaagctggccgatatcaacgagcatccaggggagaggcagtgggacagcgac
aagctaaggggggacaaggacagctccagtgcctataacacggctgagagcgccaggtcc
actcctctaggcatggagagatccccagaccactctctacagagacgcatcagcctcacc
aaccagaagaacctccggagcaccatggcagcctccggccagtccatctccatccccatc
ccagacagagagctcctgagtgagacctcgaccgggaccaccacacacagccgacaggat
cccaaccccagccctggaaccacggtcatctccagcagccccgaccagtccaacccttcc
ccctccgagtcagacccggccctgcctgcagacgacgagcgctgcgaccacaccaggagc
caccgggggccacgcagggtccctccctacccgtccccttaccacacagccccccagcag
ggcgcctctccagcccacgccagacaccttcagagctacatgcagcagctcctccagcag
acctccagtctggagacctactcccagtcccagctcagcctcctcagcgtctgccgggac
cgctccacccgcccgggggaaccacgcctcgaatggaaggtcaaagttcgagccgacggg
acgaagtatgtagcccggcgaccggcgagggaccggattctacgagaacgggcgctgagg
atcagggaggagcgtagtggagggatgaccacggatgacgacactatgtccgagatgaag
atggggcggtactggagtaaagaggagagaaagcagcagctggccagagccagggagcag
aggaggaggagggagtacatgcagaggagccggctggagtgtctcagagagggccctggg
agcggggccgagggccgtaaagaggtcaacatcctggaactcagccacaagaagatgatg
aagaaacgcaacaagaagatcctggataactggatgaccatccaggaactaatgagtcac
ggggccagagcacctgaggaccaggggactaaacaagtacacaatgccttcctgtctgtt
actacagtatag
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