Oncorhynchus mykiss (rainbow trout): 110515488
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Entry
110515488 CDS
T07259
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03420
Nucleotide excision repair
omy04115
p53 signaling pathway
omy04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110515488 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
110515488 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110515488 (ddb2)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110515488 (ddb2)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110515488 (ddb2)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
110515488 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR19_1st
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
110515488
NCBI-ProteinID:
XP_036824754
LinkDB
All DBs
Position
30:3688608..3726600
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AA seq
503 aa
AA seq
DB search
MARAKKGPSEASESKQKSRRQNGETSGAAGQTISMKLRQKKDGKNTLKTGPVFPTTIIKS
SVGKRSGPGSILHYIYQSTLGQSLHSQMRQCLLEPFVRSLSSYKLHRTASPFDRRVTCLE
WHPSHPSTLAVGSKGGDVVLWDYNVLNKTSFIQGKGAGDFIGGMTFSLTDPSKVYLASGD
GTLTEQNFQGGPGTVLSRVQDCGHDHHNVCLWYCCVDVSLSRQMLVTGDNIGRVLLLGMD
GHQVFNGKLHKAKVTHAEFNPRCDWLMATASVDHTVKLWDLRNIKDKNTYLHEMVHDKAV
NSAYFNPVDCSKLLTTDQYDQIRVYSSSDWSTPQQIIQHPHRQFQHLTPIKATWHPLYDL
MVVGRYPDERVCPGALRTIDIYDANTGELACQLLDPNAPGIISVNKFNPMGDVLGSGMGV
NILVWNRVETLAGKQQRGELQQEAGVQVGRGRGQRRRRGETRRGGGTGGRGREDEDDIGK
LKKKLSLSSGTRTRTSRDTEGSK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcacgggcaaagaagggtccttcagaagcatctgaatcgaagcagaagtcgaggagg
cagaatggagaaacgtctggggctgcaggacaaaccatctccatgaagcttcggcagaag
aaggacgggaagaacacattgaaaacagggcctgttttcccaaccaccataatcaaatct
tcagttgggaagagaagtggaccaggaagcatcctgcactacatttaccagagtacactg
gggcagagccttcattctcagatgagacagtgtctcctggagccgtttgtacgttccctg
tcctcctataagctccaccgtacagccagtccgtttgaccggcgggtcacctgtctggag
tggcacccctcgcacccctccacgctggcggtcggctccaagggaggagacgttgtcctc
tgggactacaacgtgctcaacaagaccagcttcatacaagggaaaggagccggggatttt
attggtgggatgacgtttagcctgacggacccgtccaaggtctacctggcgtctggcgac
ggtacgctgactgagcagaactttcagggcggtccaggaacggttctgtccagagtccag
gactgtggacacgatcaccacaatgtctgtctgtggtactgctgtgtagatgtgtcgttg
agcagacagatgttggtgaccggagacaacattggacgagtcttattgctgggcatggat
ggacaccaggtcttcaacgggaagctgcacaaagccaaagtgacccatgctgaattcaac
cctcgctgcgattggttaatggcgacagcgtccgttgaccacacggtgaagctatgggac
ctgaggaacatcaaggacaagaacacttacctccacgagatggttcatgacaaagctgtt
aactcagcctactttaatccagtggactgctccaagctcctgaccacggaccagtatgac
cagatcagggtgtactcctcttctgattggtcaactcctcagcagattatccagcaccca
cacagacagtttcagcacctcacaccaatcaaggccacgtggcaccctctgtacgacctg
atggtggttggacggtaccctgacgagagggtgtgtccaggtgccctgaggaccatcgat
atctatgatgccaacacaggagagctggcatgccaactactggaccccaacgcccctggc
atcatatctgtcaacaagttcaatccaatgggagatgttttaggatctgggatgggagtg
aacatcctagtgtggaacagagtggagacattggctggtaagcagcagagaggagagcta
caacaggaagcaggagtccaggttggcagaggtcgaggccagcggaggagaagaggggag
actcggagggggggagggacggggggacgggggcgagaggatgaggacgacattgggaag
ctgaagaagaagctatctttgtcctcggggaccagaaccagaacatccagggacacagaa
gggtccaaataa
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