Oncorhynchus mykiss (rainbow trout): 110515655
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Entry
110515655 CDS
T07259
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03030
DNA replication
omy03410
Base excision repair
omy03420
Nucleotide excision repair
omy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110515655
03410 Base excision repair
110515655
03420 Nucleotide excision repair
110515655
03430 Mismatch repair
110515655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omy03032
]
110515655
03400 DNA repair and recombination proteins [BR:
omy03400
]
110515655
DNA replication proteins [BR:
omy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110515655
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110515655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
Rad17
AAA_30
AAA_16
AAA_33
AAA_17
AAA_14
AAA_18
nSTAND3
NPHP3_N
NTPase_1
RNA_helicase
AAA_19
BRCT_2
AAA_28
AAA_11
Motif
Other DBs
NCBI-GeneID:
110515655
NCBI-ProteinID:
XP_036790122
LinkDB
All DBs
Position
10:complement(82627570..82698838)
Genome browser
AA seq
1013 aa
AA seq
DB search
MKKSPPAPVTPKSAPPQTKRTPTSVLDYFGSGSVQRSDRKLVASTKRKTLSQDPDESLTD
EVIAQQLQMDEDMELERQVHEDEEFAKTLAMLDQQPHAKKARKYSGEDLGSAMSANKSSA
NSSHSSTASQSQSNGRDHNQDVIGPSPKKVPPLVKTSSKLSMMKKREEEEDGGGKTNLSI
NASVSPKKEFLTPSSTDRKSKLKTGSVTMVTTPTTLKTSPKKESTSPEESEKKRGNSSAF
RSFLNRDGPRALGSKPIPTGAENCLEGGVFVISGVLESMEREDAKSLIERYGGKVTGNIS
KRTTYLVMGRDGGVAKTEKAEGFGTKILDEDGLLELIRSTPGKKSKYLIAAEAENKGFKS
RTPDTKTTSRTPKQSPKTRSMTPSPSKPGSASGRGVRVGDSVTLPGRGTGSGVKRGLDLG
GKSQSSSSSATLSLPSFAGEDFSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHT
HHAVGGAKPAGRGFGKFTSTKDNGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNA
SCTRSKNSLKQVIAESLNNTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMI
GLIKQSRIPIICMCNDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPP
ALNEMILASNQDIRQVLHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSK
GEESGHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGDVKSHLVLLSKTADSICDG
DLVDRQIRSKQAWSLLPTQAIYSSVLPGELMSGYMNCFPSFPSWLGKFSSGNKRSRIIQE
LASHMSLRTLSSRQAVSLDYLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSL
MEISLWGGQPDPYAKLDPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVEAEPGGEGQ
EEQPEEEEEEEGVAADAMIKLKKAKPSKEPKKEKTTAGDSGKGKGKGKGKARK
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtctcctccagcccccgtcacccctaaatcagcgcccccgcagaccaaacgc
acccccacctctgtcctggactactttggcagtgggagtgtgcagcgctcggacaggaaa
ctggtggccagtaccaagaggaaaactctctctcaggaccctgatgagtcgctgactgat
gaggtcatcgcccagcagctacagatggacgaggacatggagttggagaggcaggtccac
gaggacgaggagtttgccaagacgctggccatgttggaccaacaaccacacgccaaaaag
gctcgtaaatactctggtgaggatctggggtctgccatgtcagccaacaaaagcagcgct
aactcctcccacagcagcactgccagccaatcacagtccaatgggcgggatcacaaccag
gacgtgatcggtccgtcccctaaaaaggtcccccctcttgttaagaccagttccaaactg
tccatgatgaagaaaagggaggaggaagaggacggaggaggcaagacaaatctgagtatc
aacgcgtccgtctctcccaaaaaggagttcctaaccccttcgagcacagacaggaagtcc
aagctcaaaacaggaagtgtaaccatggtgaccacacccacgactcttaaaacctccccc
aagaaagagagtaccagtccagaggaatcagagaagaagcgagggaactcctcagccttc
cgtagtttcctgaaccgagacggacccagagccctgggatctaaacccatacccactgga
gcagagaactgcctggagggtggtgtgtttgtgatctctggtgtgttggagagtatggaa
cgcgaggatgcgaagtccctgatagagcgctatggagggaaggtgaccggtaacatcagt
aagaggacgacatacctggtgatgggcagagatggaggagtcgccaagactgagaaggcg
gaggggtttggaacaaagatcctggatgaggatggtctgttggagctcatcagaagtaca
ccagggaagaagtccaagtacctgattgctgccgaggcagagaacaagggatttaagagc
agaacaccggacaccaagaccacctcccgcacccccaaacagtcccccaaaactcgctcc
atgacccccagcccctccaaacctggctcagcgtcagggcgaggagtcagggtaggggac
agcgtgaccctcccagggaggggtacaggttcaggggtcaaaagagggctggacttgggg
ggtaagagccaatcatcttcctcctctgccactctgtctttgccctcattcgcgggtgaa
gatttcagtctgctgtgggtggataagtaccgcccccagaatctgaaggctgtgattggt
cagcagggagaccagagccaagccaataagttgcttcgctggctgaagaactggcacacc
caccatgcagtgggaggggctaaaccagcagggagagggtttggtaagttcaccagtact
aaggataatggttcgagcttcaaggcagccctgttatctggacctcctggcgtgggcaag
accaccacagctgccttggtctgtgaggagctgggctacagctatgtagagatgaatgcc
agctgtactcgcagtaagaacagtctgaaacaggtgatcgctgagtctctgaacaacacc
agtatcaacaacttctacacaggttcgtctcagacagtcagtagtaaacatgttctcatc
atggatgagatagacggcatggccggcaacgaagaccgcggaggaatacaggagatgata
ggtctgattaaacagtccaggatccccatcatctgtatgtgtaatgaccgtaaccaccaa
aagatccgctctctggccaactactgctttgacctgcgcttccagagaccacgactggag
cagatcaagggtgccatgatgtccattgctttcaaagagggtctgaaagtcccgcctcct
gccctcaacgagatgatcctggcatccaatcaggacatccgacaggtcctccacaacctg
agcatgtggtcggctaaggacaaggtcatgacctacgaccgggtcaaagaggacgccaac
aacgcacgcaaggacatgaagttgggtccgttcgacgtgtgtcggaaggtgttctccaag
ggggaggagtcaggtcacatgacgttgattgacaagtcggacttgttcttccacgattac
tccctggcccccctcttcgtccaggagaactacatacatgttagacctgctgctgctggt
ggtgatgtgaagtcccacctggtcctcctcagtaagacagctgattctatctgtgatgga
gacctggtggacagacagatacgttccaaacaggcctggtctctactgcccacacaggcc
atctattccagtgtgttaccaggagagttgatgagtggttatatgaactgcttcccctcg
tttccctcctggctgggaaagttctcctccggcaataaacgctcccggatcattcaggag
ctggcctctcacatgagcctcaggacattaagtagcagacaggcagtgagcctggactac
ctcccgtacctccgcatggccctgttgtgtcctcttcagaggcagggggcggagggggcc
ggtcaggccgtccagctgttagacgactaccacctggtcagagaggatgtggacagcctc
atggagatcagcctctggggggggcagcctgacccctacgctaaactagaccccaaggtg
aaatcagcgttcacgagggcttataaccgggagacccacctgacaccgtactccctccaa
ccaatcaagaagggccgtcgtggcgggggagtggaggcagaaccgggaggagaagggcaa
gaggaacagcctgaggaagaggaggaggaggaaggtgttgcagctgacgccatgatcaaa
ttgaagaaggccaaaccctccaaggagcccaagaaggagaagacgacagccggggattct
gggaagggaaagggcaaaggcaagggcaaagccaggaagtga
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