Oncorhynchus mykiss (rainbow trout): 110516093
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Entry
110516093 CDS
T07259
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110516093 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110516093 (dhx16)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110516093 (dhx16)
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110516093 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110516093
NCBI-ProteinID:
XP_021450381
Ensembl:
ENSOMYG00000020973
LinkDB
All DBs
Position
3:complement(26548090..26567630)
Genome browser
AA seq
1054 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSSQDFVAHLKSTGTIDINQRVIAFA
QELYEKIPRKQVVEKPARAIERHVMEIERKNRTYTLLSDSESDGEAVREREKEKKKSKDR
GDKRKHLRKREESQSSSEEETPKSSKLGHGDQKSSKKDEEEEEEEWEKEERERVLDLEER
DAFAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKR
EAEKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRY
YMPEEKRSKDIPQRDMELELEMPMEGGGEQGRWEEERLKTASLIFGAKKEREKGLKAERE
KYQLILEEDEMINFVSSAVIMKGTQDEKEQEQAALSQAEVQKQSIQEVRRSLPVFPYRED
LLLAIQQHQILVIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQ
EVGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAP
EADYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPI
YANLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQ
WLESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGY
FYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSW
LLEVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagaacaatgggtgagtgacagtctgcatgacatccttggccttagtgac
agatatgtcgcccagttcatgatcggctccgcgcgtaaatcatcgagctctcaagacttt
gtggcccacctcaagtcgacaggcaccatcgacattaatcagagagtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaagcaagtggttgaaaagccagccagagcgata
gagcgacacgtcatggagattgagaggaagaatcggacttacaccctactgtcagacagc
gagagtgacggagaggcagtgagagagagggagaaggagaagaagaaaagtaaagaccga
ggcgataagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggag
acccctaaaagtagtaagctgggccatggtgaccagaagtccagtaagaaggatgaagag
gaggaggaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagg
gatgcctttgccgaacgaatgaaactgaaggacaaagacaagacgaggaacatcatggag
agaacggacaagaagggctacgaggaggctcagaaaagactaaagatggcagaggaggat
cacaagaaaatccttccagagctgcggaaggagtctcgcaggaactacctgtcaaagaga
gaggctgagaagctggaggacctggaggcggagatcgccgacgaggagtacctgttctcc
acggacgcgctgactgagagggagcggaaggagctggagtacaagcgcaacctccgagac
ctggccaaggactacaagaaagccggtgccaaggagaaagaggagaggaagaacagatac
tacatgccggaggagaagaggagtaaagatattcctcagagggacatggagctggagttg
gagatgcccatggagggtggaggagagcagggtcgctgggaggaggagaggttgaagacc
gcctcgctgatcttcggggccaagaaggagagggagaaagggttgaaggcagaaagagag
aagtaccagctgatcctggaggaggacgagatgatcaactttgtcagcagtgccgtcatc
atgaagggaacccaggacgagaaggagcaggagcaggcagccctgtcccaggcggaggtc
cagaagcagtccatccaggaggtgagacgcagcctgcccgtgttcccctacagagaggac
ctgctcctggccatccagcagcaccagatcctggtcatcgagggagagacgggctccggc
aagaccacccagatcccccagttcctcatggagtcgggctacaatgatggaggcatgaag
attgggtgtacccagccccgtagagtggcagccatgtctgtagcagccagggtggcacaa
gaagtgggcgtcaagctgggcaacgaggtaggctacagtatccgttttgaggactgtacg
tcggagaggacagtactcaaatacatgactgacggaatgttgctcagagagttcctgaca
gagcctgatctggccagctacagtgtggtcatcattgatgaggcccacgagcggacgctg
cacacagacatcctgtttggtctgatcaaggacattgcccggttccgtccggacctgaag
gtgctggtggccagcgccaccttggacacagagcgcttctcctgcttctttgacgacgcg
ccggtattcagaatccccggcaggaggttccctgtggacatcttctacactaaggctcct
gaggcagactacctggaggcctgcgttgtgtctgtgctacagatccacgtcacacagccc
cccggagactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctg
ctgcaggagagatgcaggcgtctgggttctaagatatcggagctcctggtgcttcccatc
tacgccaacctaccttcagacatgcaggccaagatcttcagccccacaccccctggctca
cgcaaggtggtggtggccactaacattgcggagacctctctaaccatcgatgggatcata
tacgtcatagatccaggcttctgcaagcagaagagctataacgcccgcactgggatggag
tctctgattgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggc
agagtggcggctgggaagtgtttccgtctctacactgcgtgggcgtttaaacacgagatg
gaggagtccaccgtgcccgagatccagcgaactaacctgggcaacgtggtgctgctgctc
aagagcttgggaattaatgacctcatccactttgatttcatggatccgccccctcacgag
accctggtgctagctctggagcagctgtacgcactgggtgcactcaaccacctcggagag
ctcaccaagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatg
atcctggcctcagaacagtataagtgttctgaggaggtgttgaccatcgcggccatgctg
tctgtgaacaactccatcttctaccgacccaaagacaaggtggttcacgccgacaacgcc
aggcagaactttgtggtccccgggggagaccatatggtgctgctcaacgtctacacacag
tggctggagagtggctactccacccagtggtgctatgagaacttcatccagttccgctcc
atgaagcgggcgcgggatgtcagggagcagctggagggcctgatggacaggatcgaggtg
gaggtgtgcagctcaggcggagacattgtgcccatccgcaaggcagtgacggcggggtat
ttctaccacacggcgcggcttagcaaggggggctacaagacggtgaagcaccagcagaca
gtctacgtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccac
gagctggtcttcaccaccaaggagttcatgagacaggtgattgagatagacagcagctgg
ctgctggaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaag
aagatgcctcgcaaacagggcaaggccaaggaagagctgggctaa
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integrated database retrieval system
