Oncorhynchus mykiss (rainbow trout): 110516876
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Entry
110516876 CDS
T07259
Name
(RefSeq) non-muscle caldesmon isoform X1
KO
K12327
caldesmon
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
110516876
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
omy04812
]
110516876
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
110516876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
110516876
NCBI-ProteinID:
XP_036837487
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Position
6:complement(93111509..93199047)
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AA seq
621 aa
AA seq
DB search
MSGHLLRRNSSKEGLQNLLRVTAQRSIEDAEEIERERRRRARERQGDQDPHTHTGPASTT
SPTPDNGLPELYPMCESELKASGCQLALEEDEGFSDWTQRLEKRRQRHLEEQESSEDHQP
QQQQNQSQQHEPQQHHPQQQHQPQQHHPQQQQNQPQQHQPQQHHPQQQQQPQMLRLNRAS
PIRPCLKTRPGPGPEEREEKEVEWERRASNKTQDTSRRVTDDKVVEKKKSELKISYTSKV
MRHVNSNGEAAGAEVTSYLVAGKLSPSRSGSLGGQRQEEVDGEVPGGQLETEKAPGQGQG
TLEQLRQRQQEDQEEMEELNRRREEKRRAREEEEHQREKEEQHRQEQEEEERKRVKDGIE
SRRMAASERRMKNLSISSIEGDESFSPFSPMSPTFKNDTEERMTSENTCTINERTESLNR
SLQKSNSIKKTQPPIPISKIDNRLEQYTHAIETSSMEAKAARQQALTDLPSPTEPVASKK
NLFEAGEAWSQPPRETPSKDTEGLNVGVADLIHQWVKGNPDGSCKSLSKPAFSTVFLHLR
YILICPFFKEVKAGDVLSKKNLWENLGESSPSGRAGKGASSGKKYKFVMMAHGKYEKVVV
GDDDYNEHTNGKSTGQCLEEL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtcatttactaaggagaaactccagcaaggaaggtctgcagaacctgctcagg
gtgacggcccagcgcagtattgaggatgctgaggagatagagcgggaacggagacgaagg
gccagggagagacagggagaccaggacccacacacccacactggcccagccagcaccacc
agccccacaccggacaatgggctcccggagctatatccaatgtgtgagagtgaactgaag
gctagtggctgccagttggctctggaggaggacgagggcttcagtgactggacccagagg
ttggagaaacgcagacagcgccacctggaggaacaggagtcctcggaggaccatcagccc
cagcagcagcagaatcagtcccagcagcatgaaccccagcagcatcacccccagcagcag
catcaaccccagcagcatcacccccagcagcagcagaatcagccccagcagcatcaaccc
cagcagcatcacccccagcagcagcagcagccccagatgctcaggctaaacagagcctcc
ccaatcagaccctgcttgaagacacgtcctggacctgggcccgaggagagggaggagaag
gaggtagagtgggaacgaagagccagcaacaagacacaagacacttcaagaagagtaaca
gatgacaaggtcgtggagaagaagaaatctgagctgaagatctcctacacctctaaagtc
atgagacacgtcaacagcaacggggaagcagctggggcggaagtgacctcatacctagtt
gcagggaaactgtctccaagtcgtagtggcagcttgggagggcagagacaggaggaggtg
gatggagaggttcccggggggcagctggagacagagaaggcaccaggccagggacagggc
accctggaacagctgagacagagacagcaggaggaccaggaggagatggaggagttgaac
cgcaggagagaggagaaacgcagagccagggaggaggaggagcaccagagagagaaagag
gagcagcacagacaggagcaggaggaggaggagaggaagagggtgaaagacgggatagag
agtaggaggatggcggcttcagagagaaggatgaagaacctcagtatttccagcattgag
ggagacgagtccttcagccccttcagtcccatgagccccaccttcaagaatgacaccgag
gagaggatgacgtctgagaatacctgcacgatcaacgagaggactgagtctctgaaccgc
tctctgcagaaaagtaacagcatcaagaagacccagcctcccatccccatctccaagatc
gacaacaggctggaacagtacactcatgccatagagacgtcctctatggaagccaaggca
gccaggcagcaggctctgacggacctgcccagccccactgagcctgtggcctccaagaag
aatttgtttgaggccggggaagcttggagccagccgcccagggaaacaccttccaaggat
acagagggtctgaatgtaggcgtggccgacctcatccaccaatgggtgaaagggaaccca
gacggaagctgcaaaagcctctccaagccagcattttcaactgtcttcctacatctccgg
tacattctaatctgtcccttcttcaaggaggtgaaggccggtgatgttctgagcaagaag
aacctctgggagaatctgggagaatcttccccgtctgggagagctgggaagggagcttcc
tctggtaaaaagtacaaatttgtgatgatggctcacggcaagtatgagaaggttgtcgtc
ggtgatgatgattacaacgagcacacaaacgggaaatcaactggacaatgccttgaggaa
ctgtga
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