Oncorhynchus mykiss (rainbow trout): 110517212
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Entry
110517212 CDS
T07259
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omy03016
]
110517212
Enzymes [BR:
omy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110517212
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110517212
Prokaryotic type
tRNA splicing ligases
110517212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
110517212
NCBI-ProteinID:
XP_036801398
LinkDB
All DBs
Position
15:80268944..80284094
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVCD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggggtgttttacgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggc
gggtttctccctgccatgaaacagattggaaacgttgcagctctgccgggtatagtccat
aggtccatcggcctgccagactgccactcagggtatgggttcgccattggaaacatggct
gccttcgacatgagcgaccccaacgcagtcgtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctagacgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgaccgccaaggatctagaggaggctctagagatgggagtggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgcctcagctaggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggcgacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgcccgtatcttttca
gaggagggacaagactacctgaaaggaatggccgccgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccaccactcct
gatgacctggacatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtagatgggaaacagaagactctactgctgcatcgcaagggatccacccgggcc
ttccctccacaccaccccctcatccctgtagactaccagctgacaggccagccggtgttg
atcgggggcacgatgggcacctgcagttacgtcctgacgggcacggaacagggcatgacg
gagaccttcggcaccacctgtcacggcgcgggtcgggctctgtctcgggccaaatcccgc
aggaacatcgacttccaggacgtgttggataagctggcagacaagggtatcgccatcagg
gtggcttcgcccaaactagttatggaggaggctccggagtcgtacaaaaacgtgtgtgat
gtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgacccatc
gctgtgatcaagggataa
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