Oncorhynchus mykiss (rainbow trout): 110517366
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Entry
110517366 CDS
T07259
Symbol
lmo7b
Name
(RefSeq) LIM domain only protein 7b isoform X1
KO
K06084
F-box protein 20
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110517366 (lmo7b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110517366 (lmo7b)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110517366 (lmo7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ_6
PDZ
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
110517366
NCBI-ProteinID:
XP_036828254
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MEWREQTSVTCEDAFTEAQRWMEEVTNKSFGSNNFRSALENGVLLCHLINQLKPGLIKRM
NTLSTPMAGLDNVNVFLRACGTLGLHEAQLFHPGDLQDLSTRATLRCVESKRRLKNVLIT
IYWLGRKAQADPFYSGPQLNLKAFEGLLGIALSKALEETPRGSVTDRDYSDVIYPERDDE
LPLTRSQTPGYSREDSVESFNSALSFDSAESRTLSCISDSILRAGSEDSSSDVEAENSFR
MKAAEGRESGLRNWGNVPAPFQRKKREENRIKGCLPSPLTRSKSLNDIRRFPSPTQVVRQ
VSEGGMELSPSAVSQDQLQMVRARVHESEAKWHNDLTKWKLRRHRSNCDLRRKMQERDNI
VLMANAGVGTVGTFNSLQEDREEDEESLCSNGHKVSPSTSFMEGSLVLRPHTRAPTSVSE
GSLELRPHTRAPLALSSSVESPYSPGASEPFTAPSVTLQGPGAVPQSEPLVLEGRRHTPV
EPDGAGGLATFPNSASPISSQTISSPALFISTGRDHNVSLLSNGIPTTLPGSSSSLTTGT
SSSLTTSDPVNGTGSNLTSGTGSNLTSGTGSHNPSASMDIPDQALLSTVESLTSVGAPGH
VSAPQQQELPLYRYSSRAPGGRGRGSASLPRGYRRSEGSLSCLSAGFTPRPFGAKSSRVS
SLPRLYNLENSLLNENGNGSLLPTKTAPTRPQKMVTISEVAVRAQPWATANQSSVNQEVE
EGGSQTQPSILKTRGVPGPATHPKPLPPSLRPSLPVSVRQNGSAQVRHSDRVSLTLKINS
RPHFGFNTHWDSTGARVGGIQPGSPAELCQLRAGDEIVSVGGHRVAEMSHSQWKGMMTSA
LQKGSLTMDVQRYGNNGPTDTSRDATMMKLAQINGQEVNVLTSKSSKGGFQDDPLTIRSK
GGSASAISDLQVPSLSTSPSSWSWDPEEERRRQEKWQEEQERLLQEKYRQDQERLDAEWQ
QAQEEAGAERYRQAEVTPDPLPSRCIVGYVVPCVKSSTPNMESSGEMTNGIASLASPQPV
LSQPMAPVAIGCCHVESNPKEVVFDGGRREEPRPQEGRNLEEETDEVAGGDKWSGDSYGF
TQLSIADRMKSKSSPSLEGFHRQEVKGATREVARRKPPQSMSLVEAERQQILDEMRKRTA
LLTDNSWIRQRSTSDNRQPTNRRGPMRRYDSLDNLPSSATLLSNPQRPHSSLGFAAPYRP
PSSRHSMGVALGGYSNGTQKHSPTWPRPFSTSSPPPNTGEEPATGESRPVSQQHHRVLTS
RQVCSVCVCPMGRGAAMVIETLNLCFHLACFQCVDCRCRLGGSEVRAQIRISNGKPYCDP
CYIRLKSHLATSL
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgagaacagaccagtgtgacctgtgaagacgccttcactgaggctcaacgg
tggatggaggaagtgacaaataaatcattcggaagcaacaacttccgctctgctctggag
aatggagtcctgctctgccatctaatcaaccagttgaaaccaggccttattaagagaatg
aacacgctgtctactccaatggctggactggacaatgtgaatgtgtttctgagagcgtgt
ggtacactcggtctacacgaggctcagctgtttcatcctggagacctgcaagacctgtcc
acacgcgctacactcaggtgtgtagagagcaaaaggaggctgaaaaacgttctaatcacc
atctactggctgggtcggaaggcccaggcggatcccttctactctggccctcagctcaac
ctcaaagcgttcgagggactactgggcatcgctctgtccaaggctctagaagaaaccccc
agaggcagtgtaacagacagggactacagtgacgtgatctacccagagagggatgatgag
ctgcctctaacccggtcccagacacccggctacagcagagaggactccgtagagagcttt
aactcggccctgagctttgactcggcggagtcacgtaccctcagctgtatctctgactcc
atcctgagggccggcagcgaggactccagcagtgacgtggaggcagagaactcttttagg
atgaaggcggcggagggcagagaatcgggactgaggaactggggcaacgtacctgcaccc
ttccagaggaagaaacgtgaggaaaaccgaattaagggctgcctcccgagccccctcacc
aggagcaaatcgttgaatgacatcaggcggttcccgtcgcccacgcaagtggtgcgccag
gtttctgagggtggcatggagctgagccccagcgccgtgagccaagaccagctgcagatg
gtcagagcccgggtccatgagagtgaggccaagtggcacaatgacctgaccaagtggaag
ctccggcggcacaggtctaactgtgacctgcggaggaagatgcaggagagggacaacatc
gtcctgatggccaacgcaggggtcggtacagtcgggacattcaatagtctgcaggaggac
agggaagaggatgaggagtccctatgcagcaatggccacaaggtctctccgtccacctcg
ttcatggagggttccctggtgctccgaccccacaccagagcccccacctcggtaagtgag
ggttccctggagctccgaccccacaccagagctccgctggccctcagctcctccgtggag
tcaccctacagccccggagcgtcggaacccttcaccgcccccagtgtgaccctccaggga
cccggagccgtgccccaatcagagcccctcgtcctagaggggaggcgtcacacaccggtg
gagccagacggagctggaggattagccactttccccaactctgcctctcccatctcctcc
cagaccatctctagcccagctctcttcatctccactggacgagaccacaacgtctccttg
ctctcaaatgggatcccgacgaccctccctggatctagctccagtcttactactggtacc
agttcttctctaactacctctgacccggtgaacggtaccggctctaacctaaccagcggt
accggctctaacctaaccagcggtaccggctcccacaacccctctgcctccatggacatc
ccagaccaagccctcctctctactgtagagtccctgacctcggtgggagccccgggtcat
gtctcagctccccagcagcaggagcttcccctctacaggtacagttccagggctccggga
ggaagaggaagaggatctgcctctctccccaggggataccgccggtctgagggctctttg
tcctgcctctctgccggcttcaccccccgaccgtttggagccaagtcctccagagtgtcc
tcgctacccaggctctacaatttggagaactctctgctgaatgaaaatggaaacggttcc
ctgctccccaccaagactgctcccacccgcccccagaaaatggtcactatctcggaggtc
gctgtcagggctcagccctgggccacagccaatcagagcagtgtgaaccaggaagtagag
gagggtgggagtcagacccagccctccatcctgaagaccagaggggttcctggacctgcc
acccaccccaaacccttacccccttctctccggcccagcctccctgtctcagtcagacag
aatggctctgcccaggtacgtcacagtgacagggtgagtcttaccttgaagattaacagt
cgaccacactttggtttcaacactcactgggactcgacaggagcaagagtcggaggcatc
caaccaggtagtcctgcagagttgtgccagctccgtgcaggtgatgagatagtgtctgtt
ggtgggcacagggtggcagagatgagccacagccagtggaagggcatgatgacctctgcc
ctgcagaaaggcagtctcaccatggatgtacagcgctatggtaacaacggtccaactgac
accagcagagatgcaacgatgatgaaactggcccagatcaacggacaagaggtcaatgtg
ctgacctctaagagcagtaagggaggttttcaggacgatcccctgactatcagaagtaaa
ggaggatcggcgtcggcgatatctgatctccaggtgccgtccctcagcacctccccctcc
agttggtcctgggaccccgaggaagagaggaggaggcaggagaagtggcaggaggagcag
gagcgcctcctacaggagaagtaccgtcaggaccaggagaggctggatgctgagtggcaa
caggcccaggaggaggcaggggcggagagatacaggcaggctgaggtgacccctgatcct
ctaccgtccagatgcatcgtgggatatgtagtcccttgtgtcaaatcatccacaccgaac
atggagagctcaggagagatgaccaatgggatcgctagccttgccagtcctcagccagtc
ttgagccagcccatggcccctgttgccattggctgttgccatgtggaatccaatccaaag
gaagttgtttttgacgggggaagaagggaggagcctcgtcctcaagaagggaggaacctg
gaagaggagactgatgaagtggcaggaggagataagtggtctggggactcctatggtttc
acccagctatctatagctgacaggatgaaatccaagtcctccccatcgttggagggtttc
cacagacaggaggtgaaaggcgctaccagggaggtcgctaggaggaagcctcctcagagc
atgtcgttagtagaggctgagaggcaacagatcctggacgagatgaggaagaggaccgct
ctgctgaccgacaacagctggatacgacaacgctccacctctgacaacagacaaccaacc
aaccggcgagggcctatgaggaggtacgactctctggacaaccttccctcttccgccacc
ctgctctctaacccccaacgcccccactcctccctgggtttcgccgccccgtaccgcccc
ccctcctcccggcacagcatgggtgtggccctggggggttactccaacgggacccagaag
cacagccctacctggccccgccccttcagcacatcttcccccccgcccaacaccggagag
gaacccgccaccggcgaatcacgacccgtctcacagcagcaccaccgagtgctgacttct
cgtcaggtgtgttcagtgtgtgtgtgtcctatgggcagaggggctgccatggtcattgag
accctgaacctctgcttccacctggcctgttttcagtgtgtggactgcaggtgccgactt
ggagggtcagaggtcagagcccagatcagaatcagcaacgggaagccttactgtgacccc
tgctacatccgactcaagtcacaccttgccacctccctgtga
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