Oncorhynchus mykiss (rainbow trout): 110517481
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Entry
110517481 CDS
T07259
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110517481
03036 Chromosome and associated proteins [BR:
omy03036
]
110517481
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110517481
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110517481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110517481
NCBI-ProteinID:
XP_036828018
UniProt:
A0A8K9X5W7
LinkDB
All DBs
Position
Unknown
AA seq
1786 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLDHPGLDSQYESCPWSSGSPCSRDGNWDKVLVDSVCSDTPSSSS
SSSAAGNDPELTSECMDTDSASSSGGSEKNLVTAMTSSSPPPPGAKGNGGRNGNHFSPLT
TGGVPPVSSNNIITRNGAGKGPWGCLANVGPNDAPADGSHGNKPSPWASANGAGLTPGTL
NPKVNHSAWPGPQGPSGCKIGQQGGSLGWEGTQPDSLSLSEQPQHLLLNDTTIKTRHLNT
TNGPNNTTNVVDTSSLPNSVHRNESGSGLRSWGAGGGGGGGGAGSEVGEQLSNGTLSGAQ
HPHSEGLAGGFSKPWGASGPGDTVNGQGQGQPSPAAAVYNSKTNSKASVGRWDSASPHNL
GTGGGASNGNGLGPAGIPRPWGNASSSSSSSSSGSSSNRQPPNGEWSSLPGNKSQDSGDG
RKSGGGANGWKSLEDDALRVGGGGGGGPASVGASGGSEGSGESSGGRSLDRDRNDPRRRG
PLPGSTQVLSCSDVDPRVLCNTGWGQTPVRQNTAWDVTSPAPRPDDRKPGNGGPGWGSKS
HAARSQTSSSGGWRGGDGPGNTGPESGGSGWVEQKTLSGCGDRDNKGPGGERGWDNGNPS
STWGNSQKEDLSNTWINPPKPQKQGWGMGGGDRSRGGGGGSSYWGQPQKTSVSGGWDNDS
DRSGSAGWGEPGRPANTNTHPDGSSGTWGGSGGTPDHPSNPHSGWGEPPVSNSAGHKPQN
HQTQGGWGEPAMKPGHPSQSWGDPAEWGQGSDANPDPRGPPPGGPHPSKPSGWTGVAVPA
GPSHKEESSSTGWEEPSPESVRRRMEIDDGTSAWGDPSKYNCSGVNMWNKTSQSEQDAMA
TTKPPQPQPPPPLNNMANKDKTCSSGWGEQYTGPQKMESGTWGDPPGPPVSVDNGTSAWG
KPMDTSSTWEELRDRGDNSATGGWEGPGAQNHHKPGPKPMQQESSTWCGEEVSCQASWEQ
EEEVEIGMWSNTPSHRDRDRDGHRENHRDRDRDGHRENHRDGHGQDNRNNGPQQHSWNYM
KKIPPKINKSVNKQEDAWMNQFVKQFNNMNYPRDSPEDLSKSNKMEMGGGGGMMSDKRMD
VNMGEYSGVMGKNSASRHQIHKEPSMERSPYYDKLSLPLSAYDRSASEELSSNHGMSFSP
SHSAQPIPSLCSGQAPTPSVSEAGRQIVNSMYGSSAVPSHNAPQPLNSAQNNLRNQVPPP
VLSSQVPPSILKYPPSAGGLNLFGPQQVAVLNQLSQLNQLSQLNQLNQLQRLLLQQSQQQ
NQRPMPVGQQQSHRPMPVGRQQDQQGRPIGSSQSMMQPPQHLDHSLLKQNPAHQPLKSYM
DNYMPQNASELQKEPNHMGSFTNFPLGLNSNLNVGLDTGSGCKEPQSRLKKWTALDVSVN
SPLEHKPGAMSSGLRLEDSPFGPYDFLSAGSAPLSSPGQSMGSVGDSWPPRAKSPHGNTN
VTWPPEFRPGEPWKGYPNIDPETDPFVTPGSVINNLSINTVRHIDHLRDLTGPSSSLNTT
MPSNSAWSSSRASSHSGSLTSTTQSTTVRSGESKWSPGGCNSSLAHELWKVPLAPKGLSA
PSRPPPGLTSHPQKPPPPWGEAPLRLGGWGHSDSRYTPGCSWSDGSSSSGRTNWLVLKNL
TTQMDGSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILA
EFASEEEINRFFAQGQSLAAASPGWQAIGSSQSRMGGALEGSHPFPSRAPEPSQWNVSDL
HSSSLWGGLNYSTSLWGASEGGRINSPSPISSFLPVDHLTGGGDSM
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atggctccaattcgggactcggtcagccactctcctaaccaaacaggtttggaccatcct
ggcctggattctcagtatgagagttgcccctggagctctggttctccctgcagcagagac
ggtaactgggacaaggtgctggtagactcggtctgcagcgacacgccttcctcctcctcg
tcctcctcggcagccggcaacgaccccgagctcacctcagaatgcatggacacggactct
gcctctagttctggcggctcggagaagaacttggtcaccgcgatgacgtcgtcgtcgccg
ccgcctcccggcgctaaagggaacggaggccgtaacgggaaccacttctccccgttgact
accggcggcgttcctcccgttagcagcaataacatcataacgcgtaacggggcggggaaa
ggcccgtgggggtgcctggccaacgtcggccccaacgacgcccccgccgacggtagccac
ggcaacaagccaagcccctgggcgtcggccaacggtgctggtctgacccccggcactctg
aacccaaaagttaaccacagtgcctggcccggtccccagggaccctccggctgtaagatt
ggccagcagggaggctctctgggctgggaagggacacaaccggacagcctctctctgtct
gaacagccgcagcacctcctcctgaatgatactactatcaagactcgccaccttaacacg
accaacggaccaaataacactactaacgtcgtcgacacctccagtttaccaaactcagtg
cacaggaacgagtccggctcggggctgcgttcctggggagcgggaggaggaggaggagga
ggaggagcggggtcagaggttggagagcagctctccaacgggaccctgtctggcgcccag
caccctcacagcgagggcctggcagggggcttctctaagccctggggggcctcgggccct
ggagacactgtgaacggccagggacaaggccaaccctcccctgctgctgctgtttacaac
agtaaaactaacagcaaggcctctgtagggaggtgggactctgcctctcctcacaacctg
gggactggaggaggggcgagcaatgggaacggactgggtcctgccgggatcccccgacca
tggggcaacgcctcctcctcttcttcctcttcttcctctggctcctcctccaacaggcaa
ccccccaatggggagtggagctcgttgcccggtaacaaatctcaggattccggcgacgga
cggaagtcagggggaggagccaacggctggaagagtcttgaagacgacgccctgagggtg
ggaggaggaggaggaggaggacctgcgagcgttggggcgtctggcggcagtgaggggagc
ggggagagctctggaggccgtagcttagacagggacaggaacgacccccgtcgacgaggc
cccctccctgggtctactcaagtcctctcctgttcagacgtggacccccgtgtcctctgc
aacaccggctggggccagaccccagtacgccagaacaccgcctgggacgtcacctctccc
gcccccagacccgatgacaggaaacccggtaacggaggccctggctggggctcgaaaagc
cacgccgctcgttctcagacctccagctctggaggatggcgtgggggggacggcccgggc
aatacgggcccagagtcaggagggtctggctgggtagagcagaagaccttgtctgggtgt
ggcgacagagacaacaaaggtcctggaggagagcgaggatgggacaacggtaacccttcc
tctacctggggaaacagccagaaggaggacctctccaacacctggatcaaccctccgaaa
ccccaaaagcagggctgggggatgggtggtggagaccgctccagaggaggaggtggaggg
agcagctactggggtcagccccagaagaccagcgtgtctgggggatgggacaacgacagc
gaccgttcagggtctgcaggatggggcgagccaggccgcccggccaacaccaacacacac
cccgacggaagcagcggcacctggggtggcagcggagggacccctgaccaccccagcaac
cctcactctggctggggggagccccctgtatccaactccgccggacacaaaccccagaac
caccagacccagggagggtggggcgagccagccatgaagcccggccacccctctcagagc
tggggagacccggccgagtggggtcaaggttcagacgccaacccggaccctagaggacct
ccaccaggcggtccccacccctccaaacccagcggctggactggggtggcggtcccagct
ggaccctcccacaaggaggagtcgtcgtcgacggggtgggaggagcctagtccagagtcg
gtgaggaggaggatggagatcgatgacggcacctcggcgtggggagaccccagcaaatac
aactgtagcggggtcaatatgtggaacaagaccagccaatcagagcaggatgccatggcc
acgaccaaacccccccagccccagcccccaccacccctgaacaacatggccaacaaggac
aagacctgcagctctggttggggtgaacagtacacaggtccccagaagatggagtcagga
acgtggggtgatccgccaggcccccccgtctctgtggacaacgggacatcggcctggggg
aaacccatggacaccagctccacctgggaggagctgagagacagaggggacaactctgcg
acaggaggctgggaaggacctggagcacagaaccaccacaaacctggtcccaagcccatg
cagcaggagagtagtacctggtgtggggaggaggtgtcgtgccaggccagttgggaacag
gaggaggaggtggagatcgggatgtggagcaacaccccaagtcaccgagaccgggacaga
gacggtcacagagagaaccacagagaccgggacagagacggtcacagagagaaccacaga
gacggccacggtcaggacaacaggaacaacgggccacagcaacacagctggaactacatg
aagaaaatccctcccaagatcaacaaatcggtgaacaagcaggaggatgcctggatgaac
cagttcgtcaagcagttcaacaacatgaactaccctagagactctcctgaagacttgtcg
aagagcaataagatggagatgggaggaggaggagggatgatgtctgacaagcgtatggat
gtgaacatgggagagtacagtggagtgatggggaaaaactcagcttccaggcaccagatc
cacaaagagccttccatggagagaagcccttactacgacaagctctccctgccgctctct
gcttatgatcgctccgcctcggaggagctctcctccaatcacggcatgagcttttccccc
tcccactctgctcagcctatcccctctctctgctcagggcaggctcccaccccctctgtc
tctgaggctggtaggcagatcgtgaactccatgtatggcagcagtgcagtaccatctcat
aacgctccccagcccctcaactcagcccagaacaatctccgtaaccaagtgcctccaccc
gtcctgtcctctcaggtccctccctctatcctgaagtaccctcccagtgcaggaggtctg
aacctgtttggtccacagcaagtagctgtcctcaaccagctgtctcaactcaaccagctg
tctcaactcaaccagcttaaccagttacagcgtctcctcctccagcagtctcagcagcag
aatcagagacccatgcctgttggacagcagcagagtcacagaccaatgcctgtgggacgc
cagcaggaccagcagggccgtcctattggttcgtcccagtcgatgatgcagcctccgcaa
cacctcgaccactccctcttgaagcagaaccccgcccaccagcccctcaagtcctacatg
gacaactacatgccccagaatgcatctgagctgcagaaggagcccaaccacatgggctcc
tttaccaacttccctttaggcttgaactctaacctgaatgtaggccttgacacggggtct
ggctgtaaggagcctcagtctcgtctgaagaagtggacggccttggacgtgtccgttaac
tcacctctggagcacaagcctggtgccatgtcgtctgggctgcgtctggaggattctccc
ttcggtccctatgacttcctgtctgctggctccgcccccctaagctctcccggccaatca
atgggctcggtgggcgacagctggccccctcgtgccaaatccccccatggaaacaccaac
gttacctggcccccagagttccggcccggggagccatggaaaggttaccccaacatcgac
cctgagactgaccctttcgtgacccctggtagtgtcatcaacaacctctccatcaacacc
gtccgccatatagaccacctcagagacctgacaggaccatcctcatctctgaacaccacg
atgccttctaacagtgcctggtcatctagtcgtgcctccagccacagtggttcactcacc
agtacaacacaaagcactacggtcaggtcaggagagtctaaatggtctccaggagggtgt
aactcgtctctggcccatgagctgtggaaggtccctctggctcctaaaggtctttcagcc
ccttcccgcccccctcccggcctcaccagccaccctcagaaaccccctccaccctggggg
gaagctcctctccgcttggggggctgggggcactctgactccagatacacgcctggttgt
agttggagtgacggtagcagcagctcagggagaaccaactggctcgttctcaagaatctc
acaactcagatggatggttctactctgaggactctctgtatgcaacatggtcctctgatt
acattccacctcaacctgccgcacggcaatgctgtcgtatgttacagctccaaggacgag
gcagccaaggcacagaagagtctgcacatgtgcgtactagggaacactaccattctggct
gagtttgccagtgaggaggaaatcaaccgtttctttgcacaaggtcagtcattggccgct
gcctccccgggctggcaggccattggctcctctcagagccgaatgggcggagccttggag
ggttcccaccccttccccagccgcgccccggagcccagtcaatggaacgtcagcgacctc
catagctcctccctttggggcgggttgaactattccactagcctatggggcgccagcgag
ggcgggaggatcaacagcccttctccaatcagctccttcctccccgtggatcacctgaca
gggggcggggactccatgtaa
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integrated database retrieval system
