Oncorhynchus mykiss (rainbow trout): 110518478
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Entry
110518478 CDS
T07259
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110518478
09123 Folding, sorting and degradation
03018 RNA degradation
110518478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110518478
03041 Spliceosome [BR:
omy03041
]
110518478
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110518478
mRNA degradation factors
5'-3' decay
Lsm complex
110518478
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110518478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110518478
NCBI-ProteinID:
XP_036812766
LinkDB
All DBs
Position
21:11355998..11359023
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEDTDSSLDLGNIRAEPLNSIVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgccctcgagagctacatcaaccgtacagtggccatcgttacatctgacgga
cggatgatagtgggcaccctgaagggctttgaccagaccatcaacctgattctggatgag
agtcatgagcgtgtgttcagttcctctcagggcgtggagcaggtggtcctgggactatac
atcgtcagaggagacaacgtagctgtgattggggagattgacgaggacacagattcttcg
ctggacctggggaacatccgcgctgaaccccttaactctatagtccactga
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integrated database retrieval system
