Oncorhynchus mykiss (rainbow trout): 110519503
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Entry
110519503 CDS
T07259
Name
(RefSeq) semaphorin-6D isoform X1
KO
K06842
semaphorin 6
Organism
omy
Oncorhynchus mykiss (rainbow trout)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
110519503
NCBI-ProteinID:
XP_036836993
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Position
6:complement(80588358..80636021)
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AA seq
1146 aa
AA seq
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MVRRAGLLLSILLATATHTMSASFPEDSIPLDVVDAHFSRQYPVFRGRLSGNESQHRLDF
QLMTKIQDTLFIAGRDQVYLVSLRESYRNEIIPYRKLTWRSGEADRKNCAMKGKHRDECH
NYIKVLVPRNDDLVFICGTNGFNPMCRYYRLDNLEFDGEEISGLARCPFDAKQTNVALFA
DGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWLKEPHFLHAVDYGNYVYFFYRE
IAAEHNNLGKAVYSRVARICKNDVGGSQRVLEKHWTSFVKARLNCSVPGESFFYFDVLQS
ITDIININGVPSVVGVFTTQMNSIPGSAVCAFSMDDIEKVFRGRFKEQKTPDSVWTAFPE
ERLPKPRPGCCAGHGQAESYKTSIEFPDETLLFIKSHPLMDSSVPNIGDEPWFTKTRVRY
RLTALAVDNAAGPHGNYTVLFIGSEAGVVLKVLAKTSPLSLNDSILLEEIDLFNRAKCLS
NSEDDRHILSLHVDRDTHSVYVAFSSCVVRMPLSRCERHTNCHKSCIASRDPYCGWMPHG
ACERILPGVLSGYEQDVEFGNTVQLGDCHVFLATTSATDYKSFGDPTSDMELSSTSFTDQ
PSGPIHPPVPPVLTPTLSPHPGLGPGEGPGLGPGAGFPDLYGSGFVQQDDPATSHSLESL
PGGLEGVWEIQAGEANQMVHMNILISCVLAAFLLGALVAGLVVFCYRDSFLRHKPRHAHK
DAESAPSCSDSTGSFAKLNGLFDSPVKEYQPSLDCPKLYTNLLSSGKDLTPNGDTKTMIL
RDGCQPPELAALPTPESTPVLQQKGLQPIRNQWERANHHGKINGPRKNSNSTSSSIAKSP
QFHPSSPPPHPQPHPALGHSHIPSAVVLPNATHEYRSGYHGNPTDDVTPPRTLDRKPENM
EHLQATPPHSKGSRKEQKRSLDARNTLNDLLKHLNDANTANASSKAILQEGAGSAPRPSR
QHLMLEPLGDITEVPPKVPSREASLYSPSSSSSLPRHSPTKRVDVPLPSTPSSPTGSLGM
GGSMSGTLERRYGSHHRISSHRHSLTATSPNGVSMGVSLSHQHSMNRGGYMPPTPPSRLD
SQRGLHSPHQHPHPPSLSRQSSYSGHGSLPRQGLKRTPSLKPDVPPKPNAFTPQTPQMRV
VNKYSY
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggttaggagagcaggccttctgctcagcatactgctagctacagccacacacaccatg
tctgccagcttcccagaggacagtatacccctggacgttgtcgatgcacacttctcgcgg
cagtacccagtgttccgaggtcgtctgtcggggaacgagtcacagcacagactggacttc
caactgatgaccaagatacaggatacactgttcatcgctggcagagaccaggtgtatcta
gtgagtctccgggaatcctacaggaatgagatcattccctacaggaagttaacatggagg
tcaggtgaggcagacagaaagaactgtgccatgaaggggaaacacagagatgagtgtcat
aactacatcaaggttctggttcccagaaatgatgacctggtgttcatctgtggaacaaac
ggcttcaaccccatgtgccgatactacaggctggataacctggagtttgatggggaggaa
atcagcggactggcacgatgcccatttgacgccaagcagaccaacgtcgctctgttcgct
gacgggaagctgtactcggcaacggttgctgacttcctggcgagcgacgcagtgatctac
cgtagtatgggtgacggctcggccctcaggactatcaaatatgactccaaatggctgaaa
gagccccatttcctgcatgcagtggattatgggaactatgtctacttcttctacagagag
atcgcagcagaacacaacaacttgggcaaggccgtctactccagagtggctcgtatctgt
aagaacgacgtaggcgggtctcagcgtgtgttggagaaacactggacgtccttcgtcaag
gccagactcaactgttctgttcctggagaatcgttcttctacttcgatgttctacagtcc
atcactgacatcatcaacatcaacggagttccttctgtggtgggagtcttcactacacag
atgaacagtatcccagggtctgcagtgtgtgcgttctccatggatgacatagagaaggtg
ttcagaggacgatttaaagaacagaaaacacctgactctgtctggaccgccttcccagag
gagagactgcccaaacccaggccaggctgctgtgcgggtcatggccaggctgagtcctat
aagacctctatagagttccctgatgagaccctcctcttcatcaagtctcaccccctcatg
gactcctctgtgcctaacataggagatgagccctggttcaccaagacacgcgtcaggtac
aggctgacagccctggcggtggacaacgcagctggtccacatggtaactacacggtgctg
ttcattggttcagaggcgggcgtggtgctgaaggttctagccaagacttcccctctgtcc
ctaaacgacagcatcctattggaggagattgacctgttcaacagagccaagtgtctgtct
aacagtgaggatgacaggcatattttgtcgctccatgttgacagagacacacacagtgtg
tatgtagctttctctagctgtgtggttcgcatgcctctcagccgctgtgagcgacacact
aactgccacaagtcttgtatagcgtccagggacccctactgtggctggatgcctcatgga
gcctgtgagaggatcctgcctggagttctgtctggttatgagcaggatgtagagtttggg
aacacggttcagctgggagactgccatgtgtttttggccactacatcagcgacagattac
aaatcatttggtgacccgacctctgacatggagttgtcatctacgtcattcacagaccag
cccagtgggcccatacaccccccagtacccccagtactcacccccaccctgagtccccat
cctgggcttggtcctggggaagggcctgggttggggcctggggctggttttccagacctg
tatggctcagggtttgtgcagcaggatgacccggccacctcccattcactagagtcactc
ccagggggcctagagggtgtgtgggagatccaggcgggagaagccaatcagatggtccac
atgaatatcctgatcagctgtgtgttggctgccttcctcctgggggcgctagtggccggc
ctggtggtgttctgctacagagactccttcctccgccacaagccccggcacgcccacaaa
gatgcagagtcagccccctcctgcagcgactccaccggatccttcgctaagctcaacggg
ctcttcgacagtcctgtcaaggagtaccagccaagtctggactgtcccaagctgtacacc
aacttactgagcagtggtaaggacctgacgcctaacggagacaccaagaccatgatcctc
cgggacggctgtcagccccccgagctggccgccctgcccacccccgagtctacccctgtg
ctgcagcagaaaggcctgcagccaatcaggaaccaatgggagcgagccaatcaccacggg
aagatcaacggacccaggaagaactccaactctacctcctcctccattgccaagagtccc
cagttccaccccagttccccccctcctcacccccagccccaccctgcgctgggacactcc
cacatccccagcgccgtcgtccttcccaacgccacgcacgaataccgcagtggttaccat
ggaaacccgaccgacgacgtcacgccgccgcgcaccctagacaggaagccagagaacatg
gaacacctgcaggccacgccccctcattctaaagggagcagaaaggagcagaagaggtca
ctggatgccaggaacacactgaacgacttgctgaagcacctgaacgatgctaacacggct
aacgctagctccaaggctatcctccaagagggggccggctcagcaccccgacccagcaga
caacacctgatgctggagcctctaggggacatcactgaggttccccccaaggtccccagc
cgagaggcctctctttactccccctcctcctcctcctccctgcccaggcacagccccacc
aagagggttgacgtcccactgccctccacccctagctcccccacaggcagcctgggtatg
ggaggaagcatgagcggcaccctggagaggaggtacggctctcatcacaggatctcttct
cacagacactccctcaccgccacctctcccaacggggtcagtatgggggtgtcgttgtcc
caccaacacagtatgaacagaggggggtacatgccccccacccctccctccagactggac
tcccagagggggcttcactccccccatcaacacccccaccccccctccctgtcccgccag
agcagctacagtgggcacggctcgctcccccgccaggggcttaaacggaccccgtcccta
aagcctgacgtcccccctaaacccaacgccttcaccccacagactcctcagatgagggtg
gtcaacaagtacagctactag
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