Oncorhynchus mykiss (rainbow trout): 110519933
Help
Entry
110519933 CDS
T07259
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110519933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110519933
03021 Transcription machinery [BR:
omy03021
]
110519933
03036 Chromosome and associated proteins [BR:
omy03036
]
110519933
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
ARID
110519933
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110519933
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110519933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
110519933
NCBI-ProteinID:
XP_021452483
Ensembl:
ENSOMYG00000002303
LinkDB
All DBs
Position
3:complement(36664729..36686126)
Genome browser
AA seq
2348 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPHEDSILGEKQQENKQPGLERGSPVRGDLHDGADV
GNAGGGGEPEMKNGNGNPSRTNNNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVPSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTVMAASYNNQRYIMGNPQPTSTPTLNQLLT
SPSSTRIYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPIAKLRGQPYGGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLGSQRYPV
VMQGRTPGTMGGMQYGQQMPSYGQQGPGGYGPQGQGPYYGQQGQALHPGQQQGPYPQAPL
GQQGGQTPYPQQSHPPQTSASHAQGGPPYPQPHMPPQSQGPQPGPSQGPPQSQPPYSQGP
AQAQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPPTQGPQQLPTQQQQQQPQTPS
QPPQQPPGHSQHPQGQPASYSQNPPQQQQSPYQRFPPPPQQEISQDSFSSQSSAPPSNQP
KSVSEDVSMQGQPSSLPVSPHPTCAKDLSGSIDDLPTGTDGALSPGVSTSGVSNSQGEQS
NLAQSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPPRPSSVQSD
GSLHPAMSQSPMAQERGFVQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQQNNC
MGGYGPQGGQYGPQGYPRQPGYNNMPNANYPGPGMGNPMNPGPGMGNPINSMSGQGGLPY
AGIPPGRMPAGQMGVRPYGPNMGPNMPPNMSNMPPQVGSGMCPPPGLNRKAQEAAAVVMQ
HAATNSIHNRMPGYPNMSPGMMGSGTPYGPPMNNMPGMMNTQGGPPFPMGPNMANNSSGL
VPSPEFGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKM
WVDRYLGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVSVNKNKKWRELSTNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPVAGSGS
LQGPQTPQSTSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVALQDPFADSSDPAFPRRN
SMTPNSGYQSGMSTPEMPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASPNSGMAEQQQ
FNRGPPPGAMGNMSMAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQPNLMPVNSDT
GMYSPNRYPPQQQPRNDSYGNQYPGHGTPPGGSYPNQQPGMYPQQQQVMALTHCNYKRPV
EGGYPPAKRHEGEMYSAPFSAGLLQQQQQQPQQQPGVASAPPAGQPEMYQPQYSSGSFTG
TDRRLPGPQGQFPFPFNRERMQAATGPNTQPSMPPQIMQPSTDGPPGGVWQGRGEINYPG
NYPNRQGGPPGGPAQGPGHPGMNRGSEEMSSEQRMNHEGQWGPGQMGPRQPPYGPGGTGP
PMTRTLQSNYQSAQAMQNHIPQVSSPSPMPRGGPMESRTSPSKSPYMHSGIKMQKAGPPV
PASHIVPQSVQSPLIRRDMPFPPGSVEATHPILKPRRCLTTKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSISTFNLNSLPGLLELVVEYFRRCLIEIFGILREYEVGDPG
QRTLLDPDALKRDWSCMEDEEPGVEDMKVEGEDEEDDDEEEEEVVVQRSKQPAGTTIDGQ
AQVKQEDEQESCSEWDTLKEKDAEDKEKSCSTFEQPSSSSDPPGLGPATPQERPKQASKF
DKLPLKMVRKKDPFPAGRATQRGKVQEFDSGLLHWSAGGGDSTEHIQTHFERREEFLVPR
ERVLVVPTAKRKRPEPEKVGDKDNATPTEKYKQKGERDQRPSQPSSTEKASTTTDGKEGK
SEHSDAETEEMSQSEEPQSQQEHDKSSGPTRQQVPQRVVEDEPHSKDEGPLVTLANWQDA
LARRCVCVSNIVRSLSFVPGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEE
SDDCLGQRDEWWWDCLSLLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSA
EAQDPFPTLGPHSAMSPQRLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGE
RKVAVCREMSVVLLANLAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLH
LQGMHFEPTSNDMMRRAARALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICD
VLFLIGQS
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacaccagcccgccttccgaactaaag
aaaccggatcgagacccacatgaggattctatactgggggaaaagcagcaggaaaacaag
cagccgggattagagcgcggatctccggtccggggggatctgcatgacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccttccagg
actaataataatcagaatgattccattggatccgaggggaataaccatcccgggatggta
caccaccatgggtctggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgccgtcgagtaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcacgtaatacccaggctccggcagctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagtaatggctgcatcttacaacaaccag
agatatattatggggaatccacagccaacgtctaccccaaccctcaaccagcttctaacc
tctccaagctccactcgtatatatccaaattacccatctagtgaatatagtaatcaggaa
ggcgctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatagctaagttgagaggccagccg
tacggagggggcagtccatactcccaacaacctggacaggggccacccccaggagcccag
cagggtcacgcatacccgggccaaggctacggtccccttggctcccagagatacccggtg
gtcatgcagggccgcacccctgggactatggggggcatgcagtacgggcagcagatgccg
tcttatgggcagcagggaccaggaggctatgggcctcagggccaagggccctactacggc
caacagggccaggctttacacccaggccagcagcaagggccctacccccaggcacctctg
ggacagcagggtggtcagacaccctaccctcagcagtcccaccctccccagacgtcagcc
tcacatgcccagggtgggccgccctatccgcagccccacatgcccccccagtcccagggc
ccgcagccaggtccatcccaagggcccccgcagtctcagccgccctactcccagggccca
gcccaggctcagtctggtcagcctccttacccccagcagcaggggcctcccagccagcct
ccacagcaggccagctcccaggtcccagcagggtcacagccccagcttagctatccaccc
acgcagggcccacagcagctccccacacagcagcagcagcagcaaccccagacaccctct
caaccccctcagcaaccaccaggtcacagccagcatccacagggccagcctgcatcctac
tcccagaatcctccacagcaacagcagtcaccttaccaacgcttccctcctccaccacag
caggagatatcccaggactcgttcagttcccagtctagcgcccctccctccaaccagccc
aaaagtgtctcagaggacgtcagcatgcaaggccagccgtccagcctaccggtgagtcct
cacccaacctgtgcaaaggatctctcaggctccatcgatgacctgcccacgggcacggat
ggcgctctgagtcctggcgtgagcacttcaggtgtgtcaaacagccagggtgagcagagc
aacctggcccagtcgcccttctcgccccacacctctccccacctgccaggcatccgaggg
ccctcaccgtcacccgccggctcccctgccagtgccaccacctcccgcacggggcccctc
tcacccgccacaatgccagggacccagatgccccctagaccatcgagtgtgcagtctgac
gggagtctgcaccccgccatgagccagtctcccatggcccaggagagagggttcgtacag
agaaacccccagatgcccccatacggttcaccacagtctgcctctcccctgtcaccccga
cagtcctctggaggccagatgcaccctgggatgggaccttatcagcagcagaacaactgc
atggggggctatggacctcagggtgggcagtatggcccacaaggttacccccggcaacct
ggatacaacaacatgcccaatgccaactaccctggccctggcatgggcaaccccatgaac
cctggccctggcatgggcaaccccataaactccatgtctgggcaaggggggctgccgtac
gcaggcatcccccctggtagaatgcctgcgggccagatgggagtgcgtccctatggccct
aacatggggcccaacatgccacccaatatgagtaacatgccacctcaggtgggctcaggg
atgtgccctccccccggcctcaaccggaaggcccaggaggctgcagctgtagtcatgcaa
cacgctgctaccaactccatacacaacaggatgcctggctaccccaacatgtcccctggc
atgatgggctctggcaccccctatggccctcccatgaacaacatgcctggcatgatgaac
acgcagggcggcccacctttccctatggggcccaacatggccaataactccagtggtttg
gtccccagtccagagtttggtatggatgggaaaatgaaccagggccagaagatgaacaac
aaagtggacggaacaccgaaagcagaaccgactaaatccaagaagtcaagctcttccacg
acgaccaacgagaagatcacgcgtctgtatgagctgggccccgagctggagaggaagatg
tgggtggaccgctacctgggctttatcgaggagaaagccatgggcatgaccaatctgcct
gctgttggccgcaagcccctagacctcttcagactctacgtctcggtcaaggagattgga
ggcttcgcacaggtcagtgtgaacaagaacaagaagtggcgggagctgtccaccaacctg
aacgttggcacgtcgagcagcgctgccagctccctgaagaagcagtacatccagtgtctg
tacgccttcgagtgcaagatcgaacgcggggaggacccccctcctgagatcatcactgac
aacaagaaggccaaccaggccaaggtccagccaccctccccagtagctgggtcaggttct
ctccagggccctcagaccccccagtccaccagcagctccatggccgagggcagcgacctc
aagccccccacacccgcctccaccccacaccccacccagatgccacccggggccaggagc
aatgtggcgctgcaggacccatttgctgacagtagtgaccctgctttccccagaaggaac
tccatgacccctaactctggctaccagtctggcatgagcaccccagagatgccaggtcgc
atgggtccagggccctacgagggtccagggcctaacaaagacccctttggtgccatgcgg
aaagttggggagcagttcttgcctgccagtcctaacagtgggatggctgaacagcaacag
tttaaccgtgggcctcctccaggtgctatggggaacatgtcgatggctcagagacaacag
tacggaccaggaccttacggacaaggctacgaaaggaggccagagcaggggatgggccca
gagggcagcatgggatctggtgctccgcagccaaacctgatgcctgtcaactccgacacg
gggatgtactcgccaaaccgctacccaccacagcagcagccacggaatgattcctatggt
aatcaatatcctggccatggtactccccctggtggttcctatcccaatcaacagccagga
atgtacccacagcaacaacaggtgatggctctaacccactgtaactacaagcgtcccgtg
gaagggggctacccaccagcgaagcgtcacgagggggagatgtacagtgcccccttcagt
gcagggctgctgcagcagcagcaacaacaaccgcagcagcagccaggggtggcctctgca
ccccctgctggccagccagagatgtaccaaccccagtacagcagcggctccttcaccggc
actgaccgccgcctgcctggtccccagggccagttccccttccccttcaacagagagcgc
atgcaggccgccacggggcccaacacccagccctccatgccccctcagattatgcagcca
agcactgacggacccccgggtggcgtgtggcagggccgcggggagattaactatcccggc
aactaccccaaccggcagggtggccccccagggggcccagcccaggggcctggccacccc
ggcatgaaccgcggttcggaggaaatgtcatcagagcagcgcatgaaccacgagggccaa
tgggggccaggtcagatgggccctcggcagcccccctacggccctggagggacgggcccg
cccatgacccgcaccctacagtccaactaccaatccgctcaggccatgcagaaccacatt
ccacaggtgtccagtccctcccccatgccccgcgggggccccatggagagccggacgtcg
cccagtaaatctccctacatgcacagtggcatcaagatgcaaaaggcagggcccccggtt
cctgcctctcacatagtgccccagtctgtgcagtcccctctgatccgtagagacatgccc
tttcccccaggctcagtggaggccacccaccccatcctaaaaccacgccgatgcctcaca
acgaaagatatcgggaccccagaggcttggagggtgatgatgtccctaaagtctggcctg
ttggctgagagcacgtgggccctcgacaccatcaacatcctcctgtatgacgacaacagc
atctccaccttcaacctcaattcgctgcctggcctgctggagctggtggtggagtacttc
cggcgctgcctcatcgagatctttgggatcttgcgcgagtacgaggtgggcgatcccggc
cagaggactctactggaccctgacgctctgaaaagagactggagctgcatggaagatgag
gaaccaggggtggaggacatgaaggtagaaggagaggatgaggaggatgatgatgaggag
gaagaagaggtggtggtgcagcgttcaaaacagccggccgggacgacaattgatggacag
gctcaggtgaagcaagaggatgagcaagagtcgtgctcagaatgggacactctgaaagag
aaggatgctgaagataaggagaagagctgctctacctttgagcagcccagctcttcatcg
gacccccctggccttggcccggctaccccccaggagagacccaaacaggctagcaagttc
gacaagctccccctgaagatggtacggaagaaggacccgtttccagcaggcagggcaacc
cagagaggaaaagtgcaggagtttgacagtgggctgctccactggagtgccggcggcgga
gacagcacggaacacatccagacccactttgagaggagggaggaattcctggtcccacga
gaacgagtgctggtcgtccccacagccaagaggaaaaggccagaaccagagaaggtcggg
gacaaggacaatgctacccccacagagaaatacaaacagaagggggagagggatcagagg
ccctcccagccatcatccacagagaaggcctcaacaacaaccgacggtaaggaggggaag
tccgagcactcggacgctgagacagaggaaatgtcacagtccgaagagccccagagccag
caggagcacgacaaatcgagcggacccactcgtcagcaagtcccccagcgtgtggtggag
gacgagcctcacagcaaggacgagggcccactggttacactggccaactggcaggatgct
ctggcccgccgctgtgtctgcgtctccaacatcgtgcgcagcctctccttcgtgcctggc
aacgaccaggagatgtccaaacaccctggcctcatgctgctgctgggtcgcctagtgctg
ctgcaccaccgccaccctgagaggaaacaggccccgctcacctacgagaaggaggaagag
tctgatgactgtcttggccagagggacgaatggtggtgggactgcctgtcactgttgagg
gagaactgcctggtcactctggccaacatctctggccagctggacctctccatctacccc
gagagcatctgccttcctctgctggacggcctcctccactgggctgtgtgcccctcggct
gaggcccaggaccccttccccacgttggggccacacagcgcaatgtccccccagagactg
gtcttggagaccctcagcaagctgagcatccaagacaacaatgtggacctggtcctggcc
acgccgccgttgggtcgtttagagaagctgtatgggaccttggtgcggctggttggggag
agaaaggtggccgtctgcagggagatgtcggtggtgttgttggccaacctggcccaggga
gacagcatggcagcgcgcgccattgccgtgcagaagggaagcgtgggaaacctcctgggc
ttcttggaagacagcctggcggccacccagctacaacagagccagagctctctactgcac
ctgcaggggatgcactttgagcccaccagtaatgacatgatgcggcgggcggcccgggcc
ctgcacgccttggccaaggtggaggagaaccactcagagttcacactctacgagtcacgc
ctcctcgacctctccgtgtcacctctcatgaactctgtggtgtctcacgtcatctgcgat
gtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
