Oncorhynchus mykiss (rainbow trout): 110519965
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Entry
110519965 CDS
T07259
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110519965
03015 mRNA surveillance pathway
110519965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110519965
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110519965
mRNA cycle factors
P-body specific factors
110519965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
110519965
NCBI-ProteinID:
XP_021452560
Ensembl:
ENSOMYG00000008729
LinkDB
All DBs
Position
3:39745774..39769426
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AA seq
490 aa
AA seq
DB search
MRSENDQMPGGRAKIVVEIQFRDIPREQDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEER
RKRKEADKLKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDTERAKWDKPSGQMKFK
EAKDKGQMESDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDR
AKKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDRTRNKVSDKACVCQSVLAHQDRGTS
QSEGPHQIGGALPNKDRPAMQLYQPGTRKCVGSASKGYELPIGQSPEHVAVDHCYEAIAM
GTGSEKSSED
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaatgaccaaatgcccggaggcagggcgaaaattgtcgtcgagatacaa
tttagagacattccgagggaacaggacgccgtctttgtcaactcaaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctgtccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcaccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagccggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgaggagaagtcaatggccaaccctgaaaccctgctgggagagata
gaggccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaag
aataagaaacttgagaagcagaggataagagaggaaaagagagaggagcgtcgacgcagg
gagatggagaagaaacgccagagggaggaggagaaaaggaagcggagggaggaggagaga
cgcaaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaag
ctcctaaagaagagtgaccgggacgatgacatggactctgacagactcaaggacaaaggg
gacagtggggatacggagagggccaagtgggacaaacccagtggacaaatgaagttcaag
gaagccaaggacaagggtcagatggagagcgataagggagaacacggccgcaggcagaga
gacaaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactatgagttt
gacaagtttatacggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgg
gccaagaaagatggccaccaccacggctcctactcctactgccccagtacgggtgacaag
gtgggtaaggaggacagggagggcattggcgctagcaggaaggaccgcacccggaacaag
gtgagcgacaaggcttgtgtctgtcagtctgtgttagcccatcaggacagagggacgtcc
cagtcagaggggccacaccagataggaggggctctgccaaacaaggaccgaccggccatg
cagctctaccagcctggcactcgcaaatgcgtgggctcagcgagcaaaggttacgagctc
cccatcggccagtcgccagaacacgttgcggtagatcactgctatgaggccattgccatg
ggaacaggctcagaaaagagtagtgaagattag
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