Oncorhynchus mykiss (rainbow trout): 110519975
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Entry
110519975 CDS
T07259
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110519975
00535 Proteoglycans [BR:
omy00535
]
110519975
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110519975
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110519975
Proteoglycans [BR:
omy00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110519975
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110519975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
110519975
NCBI-ProteinID:
XP_021452581
Ensembl:
ENSOMYG00000013855
UniProt:
A0A8C7PZ72
LinkDB
All DBs
Position
3:41987255..42160686
Genome browser
AA seq
1481 aa
AA seq
DB search
MDCKIGFQLGVSFLLVLLVGHSEALWFSWSSTDGTTEAPTLDNEGSGNPVASGKSPKPDN
VGEDGAEIIDVASGKRKFVQTWDQHSKATETHKLTTVGSQARNERPIEKDSHGSTSRGSK
PDESSVSLLQLIGDPPPAEITKVYGPDNSPGYVFGPDANTGQLARAHLPSPFYRDFSLLF
NLKPQSTNGGVIFSVTDPLQQIMYVGVKLSPVKANRQNVIFYYTEPDSQESYVAATFPVH
NLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELESGAGVFVGQAGGADPNK
FLGVIGELRVVGDPRAAERQCEEEGDDSDAASGDDGSGDERIPDEEKKGSGTSIWDAKIR
KYVLVEDVRLTVTTTPTSSRPIQQPPVTRKQPEVSPKKERDQGGSRGEKGDRGEKGDRGP
IGSKGDSGSESGTRGGARGEKGVLGEKGMKGKAGFGYPGSKGDPGPAGPPGPPGLPGPAA
EVVSRGDGSVVQTVAGPRGPAGPAGASGPEGPAGADGEPGDPGEDGSQGPVGPPGFPGIP
GDPGLKGEKGDRGEGQPGPRGPPGPPGQPAPTRHDRPTFADMEGSGFPDLETLRGLPGLP
GPPGLPGAPGTSVVGTGVSGLFGPKGPPGQDGAPGQPGLHGLPGADGRPGAAGARGEKGD
PGELGLPGAVGAKGAQGLNGIPGQPGQGGLAGLPGPMGPLGQPGPPGPPGPSYRVGFDDM
EGSGVGVANGVPGARGPEGQQGPPGIPGLPGRSGFPGIPGEKGSEGPQGSDGRPGLDGFP
GPNGQKGDSGDRGERGESGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGVVGGAGPQGQAG
FPGPIGPKGDMGDPGQPSYGVKGEKGEPGSIIGPDGNTLYLGRLSGEKGDRGPAGPVGPP
GQYGSPGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFSYPGVPGPPGPPGPPGPAVPV
DRFNGYDTSRNYPVTKGEKGDFGAQGLPGTPGVASNFDIFTFKNDLKGERGDTGVKGEKG
EPSGGYYDPRFGIQQGPPGPPGNPGLMGPKGDSITGPPGPQGPPGSPGIGYDGRPGNPGP
PGPPGPTGSHSLPGAYRPTHPISIPGPPGPAGPPGIPGHTSGVTVLRSYDTMIATARRQS
EGTLIYIVDKTDLYIRVRNGFRQIMLSDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSAN
NGAEQFSQGGAATHPIVPPPRQPIEIPRPAQPNNRDPRDPPQYDHRYPSQTDPRYPPQTD
GRYSPVQPENRYPTQPERRYHITPQRQPVPPPVPQPAGHIHTSGPGLHLIALNTPQVGNM
RGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPILNLKDHVLFNSW
ESLFSKTEGRMEENAPIYSFDGRDILRDSAWPEKMVWHGSSSEGHRQTDNYCETWRAGDR
AVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSYLSHSKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaagattggattccagctgggtgtctcttttttactggtactcttggtgggt
catagtgaggcgttgtggttttcctggagcagtacagacggcaccactgaggccccaacg
ctggacaatgagggatctgggaaccctgtggctagcgggaaatcaccaaagccggacaac
gttggagaagatggggcagagatcattgacgtagctagtgggaaacgtaagtttgtacaa
acttgggaccagcattcgaaggccacggagacccacaagctgaccactgtggggtcacaa
gccaggaatgagcgcccaattgaaaaggattcccatgggtccacgtcgaggggaagtaaa
cctgatgagagcagcgtctccctcctgcagctgatcggggaccctcccccggctgagatc
accaaggtctatggccccgacaacagccccggctacgtgttcggtcccgacgctaacacg
ggccagctggcacgcgcccatcttcccagccccttttatcgggacttctccctcctcttc
aacctgaagccccagtccaccaatggtggcgttatcttctcggtcacagaccccttgcag
cagatcatgtatgtgggtgtcaagctgtcgcccgtgaaggcaaaccggcagaacgtaatc
ttctactatacggagcccgactcgcaggagtcgtacgtggcggccaccttccccgtgcac
aatctggctgaccagtggaaccgcttctccatctccgtgctggacgacaaggtcaccttc
tacatcaactgcgacgaccagccccaggtggtgcgctttgagaggtccccagacgagatg
gagttggagtctggagccggggtgtttgtgggccaagctggaggggccgatcccaataag
ttcctgggggtgatcggggagctgagggtcgttggagaccctcgggccgctgaaagacag
tgtgaagaggaaggggatgactcggatgccgcttcaggagacgacggaagcggtgacgaa
aggataccggacgaggagaagaaaggatcgggtacatccatatgggacgcaaagatacga
aaatacgtgttggttgaagatgtcagactgacagttacgactactccaacgtcatcacgc
cccattcaacagcccccggtgacccggaaacaaccagaggtgtctcctaagaaagagagg
gaccagggtggatctagaggcgagaagggcgacagaggagagaaaggagacagaggtcct
attggttcaaagggagattctggttccgagtcaggcacacgaggaggggcacgtggagag
aagggagtgcttggagaaaagggaatgaagggaaaagcaggctttggctaccccggctcg
aagggtgaccccggccccgctggtccccccggaccacccggcctcccagggccagcagca
gaggtggtatcacgtggcgacggctccgtggttcagacggtggcaggtccaagaggacca
gctgggcctgctggtgcctccggccctgagggacccgcaggagctgacggagagcctggt
gatccaggtgaagatggatctcaaggccctgttggaccaccaggcttccctggaatccca
ggagaccccgggctcaaaggagagaagggtgaccgtggtgagggccagccaggccccagg
ggacctccagggccccccggacaaccagcgccaaccagacacgaccggccgacctttgca
gacatggagggctctgggttccctgacttggagacacttcggggactgcctggtttgcct
ggccctcctggcctccccggggccccaggtacctctgttgttgggacaggggtctctggc
ttatttggccccaaaggtcccccaggacaggatggtgctcctggtcaaccgggtttacac
ggcctgcctggtgctgatggtcgcccaggagctgcaggggccaggggagagaagggtgat
ccaggtgaactcggtcttccaggagcagtcggagcgaagggtgcacagggattgaatggc
attcccgggcaaccaggacagggtggattggctggcctccctggaccaatgggaccactg
ggacaacccgggccaccaggaccccccggaccaagctatcgtgttggttttgatgacatg
gaaggctctggtgtgggagtggccaatggagttcctggagccagaggaccagaggggcaa
cagggtcctcctggcatccctggcctaccaggcaggtctggtttccctggtattcctggt
gagaagggaagtgaaggaccacagggaagcgatggccgaccagggttggacggtttccct
ggtcctaatggacaaaagggtgacagcggggacagaggagaaaggggcgaatctggtcgc
gatggaaacggacagcctggaccaccaggcccacccggcccaccaggacaaatcatctac
cagacctccagcagttatgatggtgtcgttggaggcgccgggccccagggccaagctgga
ttccctggcccgattggaccaaagggcgacatgggagatccaggccaacccagttatgga
gtcaagggcgagaagggcgagcctggctcaatcattgggcctgatgggaatactttgtac
ctgggaagattgtcgggtgagaagggcgacagaggacctgccggacccgtcgggccccct
gggcagtacggttctcctgggataaagggtgaatttggaatgcccggaagacctggtcgt
cctggtgtgaacggatacaagggtgaaaaaggagagccatccacaggagctggatttagc
tacccaggtgtcccaggcccacccgggccgccgggaccacccggaccagctgtgcccgta
gaccgcttcaatggatatgacacctcaaggaattatccagtgacaaaaggggagaaaggt
gatttcggagctcaaggtctcccaggaacgccaggtgtggcctctaacttcgacattttt
acattcaagaatgacctgaaaggagagcgcggcgatacaggcgtgaagggggaaaaagga
gagccaagtggtggctattatgacccccgttttggaatacaacaaggcccgccaggaccc
cctggaaacccaggacttatgggtccaaagggagattccatcacgggcccccctggtcca
cagggcccaccaggctccccagggattggctacgacggtcgtccaggaaacccaggccca
ccaggtcctcccgggcccacagggtcccactcactaccaggggcctacagacctacccac
cccattagtattcctggcccccccggacctgctggaccacctggaatacctggtcacacc
tcaggggtgacagttttgaggtcatacgacaccatgattgctactgcaaggcgccagtcg
gagggcacgctcatctacattgtcgacaaaacagatctctacatccgggtccgcaatgga
ttcagacaaatcatgctcagtgactacagtcccttctacagagatctggacaacgaagta
gcggcagtccagcctccccctgtcgtcaattacccccaatcccaggaccactcggccaac
aatggagctgaacaattctcccaaggcggcgctgccacccaccccatcgtgcctcctcct
cgccagcctattgagatacccaggcccgcccaacccaacaatcgcgaccccagagacccc
cctcagtatgatcacagatacccctctcagactgaccctaggtacccccctcagacagat
ggccgctacagccctgtgcagcctgagaacaggtatcccacccagcccgaaagacgatat
cacatcaccccccagagacaacctgttccccctccagttccccagcctgccggtcacatc
cacacatcagggccaggactccacctgatcgccctgaacactccccaagtgggcaacatg
cgtggtattcgaggggcagacttcctgtgtttccagcaagctcgtgcagtgggcctgaag
ggcaccttcagagctttcttgtcctccaagctccaggacctctacagcatcgttcgcaag
tccgacagagacagcctccccatcttaaacctcaaggaccatgtgctatttaatagctgg
gagtcattgttcagtaagactgaggggaggatggaggaaaatgcaccaatctactccttt
gacggcagagatatcctcagggacagtgcatggccagagaaaatggtctggcacggctct
agcagcgagggtcaccgccagacagataactactgcgagacatggagggcaggagaccgt
gcagtgactggcctagcgtcttcactgcagaccggccagctcctacaacagttgcccagt
agctgctctagctcctacatagtgctgtgtatcgagaacagctatctctctcattccaaa
aaataa
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