Oncorhynchus mykiss (rainbow trout): 110520075
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Entry
110520075 CDS
T07259
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110520075
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110520075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
PFF1_TM
GPHH
Zip
IQ
ATP-synt_B
New_glue
Motif
Other DBs
NCBI-GeneID:
110520075
NCBI-ProteinID:
XP_036830244
Ensembl:
ENSOMYG00000047643
LinkDB
All DBs
Position
3:48455210..48508839
Genome browser
AA seq
2006 aa
AA seq
DB search
MMEQLLVPPGPDSFRPFCRESLDAIERRIADENAKKSKAKPNNDDDDGPKPRSDLEAGKS
LPLIYGDIPKGLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYVLNPFNPLRRI
SIKVLVHSLFSMVIMLTILTNCAFMTLSQPPDWTKNVEYTFTGIYTFESLIKILARGFCV
GKFTFLRDPWNWLDFCVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRNKCLRIPLNSTNIFDDSVDFNGTDLN
KTSSFNWTSYTNDPKNYYYLPGKKDALLCGNGSGAGLCPEGFWCIKAGRNPDYGYTSFDT
FSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYD
EQNQATIEEAQQKEEEFQKLKRQQEDAQAAAAVTAAESGEFSERGELTDTSSEASKLSSK
SAKERRNRRKKKKQREEEERGDNDKFHRSESEGSMQKSRFRFSIDASNLLNYDMRCSTPH
QSFLSIRGPLFSSRRNSQASLFSFRDRAQDMGSENDFADDENSTFEDNDSRRGSLFVPRR
SDRRSSNLSQNSMSSHVLLPANGKKHSSVDCNGVVSLVGRASLPTSPEGLLLPEVTVDKA
STDDNGNTTEPEYRKARCESYQASMNFLEDPGARQRAFSVASVITNTMEELEESRQECPP
CWYKFANTFLIWDCCPAWLRIKKRVKMIVMDPFVDLTITICIVLNTVFMAMEHHSMSVDF
KKMLSVGNLVFTGIFTAEMCFKIIALDPYCYFKEGWNIFDGIIVSLSLMEIGLANVSGMS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNY
RDCVCKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVM
VIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIGRIHQGIAFVKALVCRSFHS
ICLRKKKGSLNEDKPLDDLHRTNYNSNHTTVEIMKDPEYVKDDNGTTGGVGMGVGSNAAG
KYIVNDNTDYMQFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDIEGSKEQLSKDRPL
SSSEGSTVDIRPPGEREGSVDMEPEESMEAEGCFTDGCVRRFQCCQVNVEEGKWKMWWTL
RKTCFRIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEFADKVFTYIFILEM
LLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKSLRTLRALRPLRAL
SRFEGMRVVINALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCINMTTSERFEV
RDVANKTECLALKGTHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLDDQP
DYEVNLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPVNKFQGFVFDFITKQAFDIVIMILICLNMVTMMVETDDQADDIRK
ILYKINLVFIVMFTGECILKMISLRQYYFTIGWNVFDFIVVILSIIGMFLSELIEKYLVS
PTLFRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKKESGIDDMFNFETFGNSMICLFQITTSGGWDVLLAPILNKGEPDCDSRKEHPGST
YKGGDCGNPSVAIIFFVSYIIICFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWEKFDARATQFMEYDKLSDFADALDPPLRISKPNKIQLSSMDLPMVSGERIHCLDILFA
FTKRVLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKLEDMSALVIQRAFRRYL
LKRIVKRASAMYKEKIQSGGTLLDKEVLVIDKFPEISTSNRTDMTPSTASPPSYDSVTKP
EKNKYEKDKRKKEVKEKKKYMDVGKI
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atgatggaacagcttcttgtaccgccaggaccagacagcttccgcccgttttgtcgtgag
tccctcgatgccatcgagaggcggatcgctgacgagaacgccaagaagtccaaggcgaag
cccaacaatgatgacgacgacgggcctaagcccagaagtgacctggaggctggcaaatca
ctgccactcatatatggggacattcccaaaggattggtgtctacaccactggaggacttg
gacaccttctacagcaatcagaaaacctttatagtgttgaaccgagggaaggccatcttc
cgcttcaacgccactcctgcattgtatgtcttaaaccccttcaaccctcttagaagaata
tcaattaaggttttggtacactcattgttcagcatggtaatcatgttgactatccttacc
aactgtgcgtttatgaccctgagtcagcccccggactggacaaagaatgtcgagtacaca
ttcactggaatctatacatttgaatctcttataaaaattctggcaaggggcttctgtgta
gggaagtttacctttctccgagacccatggaattggttggatttctgtgttattgtcatg
gcatatgtcacagagtttgtggacctgggcaatgtctcagcactgagaacgttcagggtt
ctccgagctttgaaaactatatcggtcatcccaggcctgaagaccattgtgggagcgctg
atccagtcagtgaagaaactgtcagacgtgatgatcctcactgtattctgcctaagtgtc
tttgccctagtagggctgcagctgttcatggggaatttaagaaacaaatgtttaaggatc
cctcttaactcaaccaacatctttgatgattcagtcgactttaatgggacggacctcaac
aagaccagctcgttcaactggacctcttacacgaatgatcccaaaaattattactacctc
ccaggtaaaaaagatgctttgctttgtggaaatggcagtggtgccgggctgtgcccagag
ggattctggtgcatcaaagcgggccggaacccagattacggctacaccagttttgacacg
ttcagctgggccttcctgtctctgttcagactgatgactcaggactactgggagaacctc
taccagcagaccctgagggctgctgggaagccatacatgatcttctttgtgttggtcatc
ttcctgggctccttctaccttatcaacctaatcctggctgtggttgccatggcctacgac
gagcagaaccaggccaccattgaggaggctcagcagaaggaggaggagtttcagaagctg
aagagacagcaggaggacgcacaggcggcggcagcggtgacagcggctgagagtggggag
ttcagtgagagaggggagctcactgacacctcctccgaggcctccaaactcagttccaag
agtgccaaagagagacgcaacaggcgcaagaagaaaaagcaaagagaggaggaggagaga
ggggacaatgacaagtttcacaggtctgagtctgagggcagtatgcaaaagagtcgtttc
cgcttctccatagatgcctccaacctgctcaactacgacatgagatgttccacaccacac
cagtccttcctgagtatccgtggacccctgttctcatccagacgaaacagccaggcaagc
ctcttcagcttccgggaccgagcgcaagacatgggctcggagaacgactttgccgacgac
gagaacagtactttcgaggacaacgacagtcgccggggatctctgtttgtcccccggcgg
agtgaccggcgctccagcaacctcagccagaacagcatgtcgtcacatgtcctgttgccc
gccaatgggaagaagcacagctccgtggactgcaatggggtggtgtccctggtgggcagg
gcttcacttcccacatcacctgagggtctccttctaccagaggtgacagtagataaagcc
tctaccgatgacaacggcaacactacggagccagagtacagaaaggcccgatgtgaatcg
taccaggcctctatgaacttcctggaggacccaggggccaggcagagggccttcagtgta
gctagtgttataactaacactatggaagaacttgaagagtcgagacaggaatgccctcct
tgctggtacaagttcgccaacaccttcctcatttgggactgttgtccggcatggctgagg
atcaagaagagagtcaagatgatcgtgatggacccgtttgtagacctgactatcaccata
tgtattgttctgaacacagtgttcatggctatggagcaccactccatgtctgtggatttc
aaaaaaatgctttctgtgggaaacctggtgttcacaggtatcttcacagctgagatgtgt
ttcaagattattgctttggatccgtactgttattttaaggaaggctggaatatatttgat
ggtatcattgtcagtttgagcttgatggagattggcttggccaacgtgtctggaatgtct
gtcctcagatcgttccgattgctgagagtgttcaaactggccaagtcttggcccacactg
aacatgctgatcaagatcattggtaactcagtgggggctctgggtaacctcaccctggtc
ctggccatcatcgtcttcatcttcgcggtggtgggcatgcagctgtttgggaagaactac
agagactgtgtgtgtaagatctctacagactgcacactgccccgctggcacatgcatgac
ttcttccactccttcctgattgtgttccgggtgctgtgtggggagtggatcgagaccatg
tgggactgtatggaggtggctggccagagcatgtgtctcatcgtcttcatgatggtcatg
gtcatcgggaacctggtggtcctgaatctgttcctggccctgctgctgagctcgttcagt
gctgataacctggcggccacggatgatgacagcgagatgaacaatctgacggtggccata
ggccgcatccaccagggcatcgcctttgtcaaggccttggtgtgccgctccttccacagc
atctgtctgaggaaaaagaaggggagcctgaacgaggacaagcccctggatgacctccac
agaaccaactacaactccaaccacaccactgtggagatcatgaaagaccctgaatatgtg
aaggatgacaatggcaccaccggtggggtaggcatgggagtgggtagcaatgcagctggg
aagtacatagtcaacgacaacactgactacatgcagttcatccacaaccccagtctgacc
gtcacggtgcccatcgctgtgggggagtcggactttgaaaacctcaacactgaggacttc
agcagcgattcctcggacatagagggaagcaaagagcagctaagtaaagaccgtccactg
agctcatcagagggcagtacagtggacatcaggcccccaggagagagagagggctcggtg
gacatggagcctgaggagtccatggaagctgaaggatgcttcactgatggctgtgtccgt
agattccaatgctgccaagtgaacgttgaggagggcaagtggaagatgtggtggacgttg
aggaagacctgcttcaggatagtggagcacaactggtttgagagctttatcatcttcatg
atcctgctcagcagtggagcgctggcatttgaggacatctacatcgaacagaggaagacc
attaagacggtgttggagtttgcggacaaagtcttcacctacatcttcatcctggagatg
ttgctgaaatgggtggcctatggatttgccaaatacttcaccaacgcctggtgttggttg
gactttcttattgttgacgtctctttggtcagccttgtggccaacgccctgggctactct
gagctgagtgccatcaagtccctgaggacgctgcgagcgctgaggcccctgagagcgctg
tcccgcttcgagggcatgagggtggtcatcaacgctctgcttggagccatcccctccatc
ttcaatgtgctgctggtgtgcctcatcttctggctcatcttcagcatcatgggtgtcaac
ctgtttgcagggaaatactaccattgtatcaacatgaccacgagtgagcgcttcgaagtc
agagacgtggcaaacaagacagaatgtttggctttgaaaggtacccactggaagaatgtc
aagatcaactttgataacgtgggagcaggctatctggcactgttacaagtggctacattc
aaaggctggatggatatcatgtatgcagctgtggactctcgcaatttggatgatcaaccc
gactacgaagtgaatctgtacatgtatctgtactttgtggtattcatcatatttggatcc
ttcttcacactcaacctcttcattggtgtcattatagacaacttcaatcagcaaaagaaa
aagtttggaggtcaagacatcttcatgacagaggaacagaagaaatactacaatgctatg
aagaagctcggctcaaagaaaccccaaaagcctatccctaggccagtgaacaagtttcaa
ggatttgtttttgatttcattacaaagcaagccttcgacattgtcatcatgattcttata
tgccttaatatggtcaccatgatggtggagacggatgaccaggcagatgacattcgtaaa
attctctacaagatcaacctggtgtttattgtcatgttcaccggagagtgtattctgaag
atgatctcactccgacaatactactttaccattggttggaatgtatttgactttatcgtt
gttatcctgtcgataattggtatgtttctctcggaactgatagagaagtacttggtttca
ccaaccttattcagagtcattcgactggcccgaattggccgtatccttcgcctcatcaag
agtgccaagggaatccgtacactcttgtttgcgttgatgatgtcacttcctgcattgttc
aacattggtcttctgctcttcttagtgatgtttatctatgcaatctttggcatgtccaac
tttgcatacgtcaagaaggagtctgggattgacgacatgttcaactttgagacgttcggc
aacagcatgatctgcctgttccagatcaccacgtcaggaggctgggatgtcctgctggcc
cccatcctcaacaagggagagccagactgcgacagccggaaagagcacccaggaagcacg
tacaaggggggagactgtggaaacccctctgtggccattatcttctttgtgagctacata
atcatatgtttccttgttgtggtcaacatgtacattgctgtcatcttagagaacttcagt
gtggccactgaggagagcgctgagcccctgagcgaggatgactttgagatgttctacgag
gtctgggagaagtttgatgcgcgggccacccagttcatggagtatgacaagctgtcagac
tttgctgacgccctagaccccccgctacgcatctctaagcccaacaagatccagttgagc
tcaatggatttacccatggtgagtggggagcgcatccactgcctggacatcctgtttgcc
ttcaccaaacgtgtcctgggcgagggcgaaggcttggacatcctccggggtcaaatggag
gagcgctttatggcctccaatccttccaaggtgtcctacgaaccaatcaccaccacactg
cgccgcaagctagaggacatgtctgccctggtcatccagagagctttcagacgatatctt
ctcaagcgtattgttaagcgggcctctgccatgtacaaggagaagatacaaagtggaggc
acgctccttgataaagaggttctcgtcatagacaaatttcccgagatctctacttcaaac
agaactgacatgacaccatccacagcttctcccccatcatatgacagtgtcacaaaacct
gaaaaaaacaaatatgaaaaagacaagagaaagaaggaggtgaaggagaaaaaaaagtac
atggatgttgggaagatttag
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integrated database retrieval system
