Oncorhynchus mykiss (rainbow trout): 110520282
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Entry
110520282 CDS
T07259
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110520282 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
omy04812
]
110520282 (clasp1a)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
110520282 (clasp1a)
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
110520282 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
TOR1L1_N
Cnd1
HEAT_DAAF5
Sec7-like_HUS
Dopey_N
ParcG
TAN
MMS19_C
Motif
Other DBs
NCBI-GeneID:
110520282
NCBI-ProteinID:
XP_036830646
Ensembl:
ENSOMYG00000008995
LinkDB
All DBs
Position
3:57446143..57551182
Genome browser
AA seq
1658 aa
AA seq
DB search
MEVNMEYCLAQVVQKDLGRKVQVGQELIDYIADKEKSQDLEQDQTALDRMVDGIATTWVN
SSNFKVALLGIDLLSALVTRLQDRFRNHVGTVLASLIDRLGDSKDQVRDQDQILLLKIME
QAASPQYVWDRMLGGFKHKNNRTREGACLCLISTLNMYGAQGLTLSKIVPHICNLLGDPT
SQVRDAAMGCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSRFDEVQRSGNMIPSSGSDK
NFDDEDSVDGGRSSSSASSSKAPPSGRRAVAAASVRRPSSATGPGKISAKDAAAGAVDEE
DFIKAFEEVPTIQIHSNRDMEDNLSKVREVLSDDKNDWEHRVVALKKVRSLLLAGALDYD
SFPQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSTLLGNKFDHCAETLMPTLLNLVPN
SAKVMATSGMAAIRLILRHTHYSRLIPIITSNCTSKSVAVRRRSYEFLELLLLEWQTHTL
ERHVAVLTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESTYQKALQSHL
KSSDSVVSLPQSDRSSSSSQESLNRPLSVKSAIGGSMTRGKMLSSRVNSNSGGSLQRSRS
DVDVNAAASAKSRLITVPSASPFSSAATLPPGSYASLDGTPGKIDTGRVRTRRTSSGNAV
GASATVTDSRGRSRAKMMSQSQRSRSANPTGGGKARTSSNQTGSRSSSPGKLLGHSSGYG
RISRPPSASSTPADKRSKVPRSQGCSRDSSPNRLGLARLCGKALVPGTPLSSYHTLARSR
IPRPSMSQGCSRDTSRESSRDTSPARGFKPLASRRTSRSTSALSTADPHSQSDRFGLIHQ
ARISASVNAMRVLNTGTEVEAAVADALLLGDSRNKRKPMRRRYESPGIYSDDDANSDASS
ACSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRILSRVE
LKRLCEIFTRMFADPHSKRVFSMFLETLVDFILVHREDLQDWLFVLLTQLLKKMGADLLG
SVQAKVQKALDITRESFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLGRQMDPTD
FVNSSETRLAVSRIITWTTEPKSSDVRKTLHNWVVEELSSRSGTAALLEGHLEERCKQAA
QVVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSSVSSPSNTIGRTPPR
HTPSRTSPLTSPTNCSHGGLSPSRLWGGCWSGDGLSKHPPPPHPPPPPSTPSGPALRVLR
RAYSPSMLEYDTENMNSDEIYSSLRGVTEAIQSFSYRSQEDLNEPRGKRDDAVGREGVAS
SPGSDARLGLDVVEGGRTALDNKTSLLNTPSPRSFSGPRAREFAPYGYGDTITSSYDKSA
LKEAVFDDDVEQFRDCRRQDGSGENKMVLPKGFAPGSQDHSDLVADLLKELSNHNERVDE
RKGALVELLKITREDSLAVWDEHFKTILLLLLETLGDKDHTIRALALRVLKEILRNQPAR
FKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLAGSIHPEQCIKVLCPIVQTADYPINL
AAIKMQTKVIERITKESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELK
PHLQLLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSSHS
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaatatggagtattgtctggcccaggtggtgcagaaagacctggggcggaag
gtgcaggtgggacaggagctcatagattacatcgcggataaggagaagtcccaggacctg
gagcaagaccagacagctctggacaggatggtggacggcatcgctaccacctgggtcaac
tcctccaatttcaaggtggctttgctaggtatagaccttttatctgccttagtgacaagg
ttacaggaccgatttaggaaccatgtgggaacagtactggccagtctgatagatcgtctg
ggtgattccaaagaccaagtcagagaccaagatcaaatcctgctgctgaagatcatggag
caggctgcctccccacagtatgtttgggacagaatgctgggaggcttcaaacacaagaac
aacaggaccagagagggagcgtgcctttgtctcatctcaactctcaacatgtacggagcc
caaggcctaaccctcagtaaaatagtccctcacatatgtaatcttctaggagatcccacc
agtcaggtgagagacgcagctatgggctgcctggtggagatctacagacacgtgggggag
agggtgaggatggaccttagcaagaagggcctgccacagtcacggttgaatgtaatcttc
agccgatttgatgaagtccaaagatctgggaacatgatcccatcctcaggttcagataag
aactttgatgatgaggactctgtggacgggggccggtcctcctcctctgcatcgtcctcc
aaggcgccccccagtggtaggagggctgtagctgcggcttctgtccgcaggcccagctct
gccaccggacccggcaagatctctgctaaagatgctgctgcaggtgctgttgatgaggag
gacttcatcaaggcttttgaagaggttcctactatccagatccactccaacagagatatg
gaggacaatctctccaaggttcgggaggttctatctgacgacaaaaacgactgggagcac
agagtcgtcgccctgaagaaggtgcgttctctgctcctggctggagcgctggactatgat
agtttccctcagcagctccgtctgctggaggcccctctcaagctgtcagctaaagacctg
aggtcccaggtggtacgagaggcctgcatcacactgggatacctgtccacgttgctggga
aacaagtttgaccactgtgcagagaccctgatgcccacactgctcaacctggtgcccaac
agtgccaaggtgatggccacgtctggcatggcagccatacgtctcatcctcaggcacaca
cactactcacgtctcatccccatcatcactagtaactgcacgtccaaatcagtggccgtc
cgaaggcgcagttatgagttcctagagctgttattactggagtggcagacacacacactg
gagaggcacgtggctgttctgactgaaaccatcaagaaagggatccatgatgctgactca
gaggccagatcggtcgcgagaaagtgttattggggtttccatggccactacagccgggag
gcggagcatctgttccaggccctggagtcaacctatcagaaggctctgcagtctcacctg
aagagttctgacagtgtcgtgtctctcccccaatcagaccgctcatcctcctcctcacag
gagagcctcaatcggcccctgtctgtcaagagtgccataggaggcagcatgacaagaggt
aagatgttgagttccagggtgaactccaactccggcggttcccttcagcgttcccgtagt
gatgtcgacgtgaacgccgcggccagcgccaagtcacgcctgatcaccgtgccctccgct
tctcccttcagctcagcagctaccctgcccccaggctcctacgcctcactagatggcaca
cccggtaaaattgatactggccgtgtgcgtacgaggagaacaagctccggcaatgctgtc
ggagccagcgctactgtgactgacagcagggggcgcagccgagccaaaatgatgtcccag
tcccagcgatccagatctgctaaccccactgggggtggtaaggcccgaacttcatccaat
cagactggcagtcgctccagttccccaggcaagctgctgggccactcgtctgggtacggg
aggatcagcaggcccccctcagcctccagcacccctgcagacaagaggagcaaggtcccc
cgcagccagggctgcagtagagattcctctcccaacaggctgggcctagccaggctgtgt
ggtaaagctcttgttcctggtactcctctctcctcctaccacacgctagcaaggagccgt
atcccccggcccagcatgagtcagggctgcagcagggacacatctagggaaagcagccga
gacaccagccctgctcggggcttcaagcctcttgcctcccgacgtacctcccgctctacc
agcgccttatccacggctgacccccacagccagtcagaccgatttggtttgatccaccag
gcccgcatttctgcctcggtgaacgccatgagagtcctcaacactggcactgaggtggag
gctgctgtggctgacgcactgttattaggagactccagaaataagcggaagcctatgagg
cggcgctatgagtctcctggtatctactctgacgatgacgctaacagtgatgcgtccagc
gcctgctcggaacggtcgtacggctcccggaacggaggtatccctcactacctgcgtcag
acagaggatgtggcagaggtactcaaccactgtgccagctccaattggtctgagaggaag
gagggactgctgggactgcagaacctgctgaagagtcaaagaatactcagccgggtggag
ctgaagagactctgtgaaatcttcaccaggatgttcgcagatccacacagcaagagagtg
ttcagtatgtttctagagactctggtagactttatcctggtgcacagagaggacctgcag
gactggctgttcgtcctgctcacccagctactgaagaagatgggagctgacctgctgggg
tctgtccaggccaaggttcagaaggctctggacatcaccagggagtcttttccgtttgat
cagcagtttaacatcctgatgagattcattgtggatcagacacagacacccaacctcaag
gtgaaggtagccatcctgaagtacatagagtcactgggaagacagatggatcctacagac
tttgtcaactccagtgaaacgcgactggctgtatctcgcatcattacgtggaccacagaa
cccaagagctctgacgtcaggaagacccttcataactgggtggtggaggagctatcaagc
aggtccggtactgcagccttactggaggggcacctggaagagaggtgtaagcaggcggcc
caggtggtgctgatttctctgtttgagctgaacaccccggagttcaccatgctgctggga
gccctgcccaagaccttccaggacggggccaccaagctgctccacaaccacctcaagaac
tccagcaacaccagcagcgtgagttctcccagcaacactattgggcggaccccaccccgc
cacacccccagccggaccagccccctcacctctccaaccaactgctcccatggcgggctg
tctccgagtcggttgtggggtgggtgttggagtggcgatgggctgtctaagcacccccct
ccccctcatcctcctccgcctccctccaccccctctggccccgccctcagggtcctccgc
agagcgtactctcccagtatgttggagtatgacacagagaacatgaactctgatgagata
tacagctccctgcgaggggtcacagaggccatccagagtttcagctatcgcagccaggag
gacctcaacgaaccaagagggaagagggacgatgctgtggggcgtgaaggtgtggcgtcc
tccccaggctcggatgcccgtttggggctggatgtggtggagggtgggcgtacggccttg
gataacaagacctccctcctcaacactccgtctccccgctccttctccgggccgcgtgcc
agggagttcgccccctacggctatggggacaccatcacctcatcctacgacaagagtgcc
ctaaaggaggccgtgttcgacgatgacgtggaacagttcagagactgccgtcggcaggac
ggcagtggtgagaacaagatggtgctgcctaagggctttgctccgggttcccaggaccac
tcagaccttgtggcagatcttctgaaggagctgtccaatcacaacgagcgtgtggatgag
cgtaagggggccttggtggagctgctgaagatcacacgagaggacagcctggccgtgtgg
gacgaacacttcaagaccatcctcctactgctcctggagacactgggagataaagaccac
accatccgggccctggctctgcgggtactgaaggagatcctgagaaaccaaccggcccgc
ttcaagaactatgcagaactcaccatcatgaagaccctggaggcacacaaagactcccac
aaggaggtggtgcgggcagcggaggaggctgcctccaccctagccggctccatccaccca
gagcagtgtatcaaggtgctgtgtcccatcgtccagacggctgactaccccatcaacctg
gctgccatcaagatgcagaccaaggtgatcgaacgcatcaccaaggagtccctccaccag
ctgctgcctgacatcataccaggactactgcagggctatgacaacacggagagtagtgtt
cgcaaagccagtgtgttctgtctggtggccatctactccgtgattggagaagagctcaaa
ccacacctgcagctactcacaggcagcaagatgaagctgctgaacttgtacatcaagagg
gcccagacgaccaacagcaacagcagcagttcctcggatgtgtcctcacacagctag
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integrated database retrieval system
