Oncorhynchus mykiss (rainbow trout): 110520316
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Entry
110520316 CDS
T07259
Name
(RefSeq) integrin alpha-4
KO
K06483
integrin alpha 4
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04514
Cell adhesion molecules
omy04672
Intestinal immune network for IgA production
omy04810
Regulation of actin cytoskeleton
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110520316
04514 Cell adhesion molecules
110520316
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110520316
09142 Cell motility
04820 Cytoskeleton in muscle cells
110520316
04810 Regulation of actin cytoskeleton
110520316
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
110520316
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110520316
04515 Cell adhesion molecules [BR:
omy04515
]
110520316
04090 CD molecules [BR:
omy04090
]
110520316
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110520316
Exosomal proteins of other cancer cells
110520316
Cell adhesion molecules [BR:
omy04515
]
Integrins
Integrin alpha subunits
110520316
CD molecules [BR:
omy04090
]
Proteins
110520316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_1
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
DUF5370
DUF6479
Motif
Other DBs
NCBI-GeneID:
110520316
NCBI-ProteinID:
XP_036830719
Ensembl:
ENSOMYG00000032923
LinkDB
All DBs
Position
3:61475876..61505428
Genome browser
AA seq
1023 aa
AA seq
DB search
MERKTPGNLSCCWSFLLAYFWCCNLTECYNLDVDHPISFSGPNGSLFGYSVLLHKNQKNT
WLLVGAPVANSSSYPAVKKPGAIYKCSISDKRECQQISTGVDSCGKTCFSESDNQWLGVS
LSRQPRDGHVLACGHRWKNVFYSRKENQNKLPHGVCYRYEADLKQSQPLIPCYKDHQRKF
GEDYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVYNTSSRVLSAYVDDSSTVLYGSYL
GYSVGAGHFLHPDSTEIVGGAPQHGQTGKAYLFRAEENMLKIISEVKGSKLGSYFGASVC
AVDLNGDGLSDLLVGSPMYSTVREEGQVHVYINQGAANMKEAEFQLVGSNSYAARFGETI
TDLGDIDDDGFADVAVGAPQEEELRGAIYIYNGRKTGISQTFSQRITGSVLGNELKMFGQ
SVSGGIDVDENGYQDVAVGAFLSDSAVVLRTRPVIVVEAFMPLPVSVDRYVALCSDNGLP
AVCINATVCFRVHARHFTSSIVLQYNLTADTQHKESFPSRFHFHGNGTSNATTGRVKTRH
DQLTCVPHQAFIRKDVRDIFTPIHFEVSYTLKEHTVHNGGSTFPALKPILQQRGGHGNLV
ANKTEFARYCSLANCSTNLQVSAQLVLPQRHNNMPYFALGNGKTIMLNTTLVNTGDDAFL
PRLQLRFPSNLHYIKVLDAEEKFVSCDISEENKTIVGVDCSVGNLYLSSGAKVNISFLLD
VNQSSSVGDVSISINASGDNYENEDLLHDNSATLMLPLRYGVHVNIHGFMTPTSFVFGDQ
APIPVDCYTETFNYTYKVVNIGPSKSLNTIVEIDIPKILSPYPYRLLHVTDFHTSLGECS
IRNDSIAVEDACEVPQSSFIKELVFFFSKNSKRKMFCAYGDDLCLTLECRLGDMDIGKEA
TIHMEVKLNPTVLQLSPGRHGVMLMESTGIITSPREDPQTIILQKIPIAQVVLEAHFSQK
PQAAVEVFIIVVSLVVGLLILALLIFALWKIGFFKRQFKKEDEIRRDSWDYVPKHLTKTE
SRS
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaaaaacgccgggcaatctttcttgctgttggagctttcttctcgcgtacttc
tggtgctgtaatctcaccgagtgttacaatttggatgtagaccacccgattagtttcagt
ggaccaaatggatctttatttggatattctgtattgttacacaagaaccagaaaaacaca
tggttattagtcggagctccagttgcgaattcatcttcctacccagccgtaaaaaaacca
ggagcaatttataagtgcagcatctcggacaagagagaatgtcaacaaatatcaacaggt
gtggacagttgtgggaagacatgcttctctgagagtgacaaccagtggctcggagtcagc
ctgtccagacagcctcgtgatggccatgtattggcatgtgggcatcgttggaagaacgtg
ttctattccaggaaagaaaaccagaacaagctgcctcatggtgtctgttacagatacgag
gctgacctcaaacagtctcaaccactcatcccatgctacaaagatcaccaacggaagttt
ggtgaggactatggatcatgccaagcagggatatccaactttctgactgaggacttgata
attatgggagccccagggacatcgtactggactggatctgtcctggtctacaacacctcc
agcagggtcctgtctgcctatgtggatgacagcagcactgtcctctatggcagttacctg
ggctactcggttggggccggccacttcctccaccctgactccacagagattgttggcggt
gcgccccagcacgggcagactggtaaggcctacctattcagagctgaagaaaacatgctg
aagataatcagtgaagtcaagggcagcaagctcggctcgtattttggtgccagtgtgtgt
gctgtggacctgaatggagatggcctgtctgatctactggtaggatctcccatgtacagc
acagtgagagaggaaggacaagtccatgtctacataaaccaaggagccgctaatatgaag
gaagcagagtttcagttggtgggaagcaactcgtatgctgccagatttggggagaccata
actgatctgggagatattgatgatgatggctttgctgatgtggcagtgggggctccgcag
gaagaagagctgcgtggggctatatatatctacaatgggaggaaaacagggatctctcag
accttctctcaaaggatcactggctctgttctgggtaatgagttaaagatgttcggccag
tctgtgtcaggaggcatcgatgttgatgaaaacggttaccaagatgtagcagtaggggcc
ttcctctcagactcagctgttgttctgaggactcgtccagtaatagtggtagaagccttc
atgcccctgcctgtcagtgtagaccgctatgtagcactgtgttctgacaacggtcttcct
gctgtctgcatcaatgctacagtctgcttcagggtccatgctcgacacttcacctcttca
atagtgctccagtataatctgacagcagacacgcagcacaaggagtccttcccctcacgt
ttccatttccacggaaacgggacgtccaacgctacaacagggcgggtcaagaccagacac
gaccagctgacctgcgtcccccaccaggccttcataaggaaagatgtccgagatatcttc
acacccatccattttgaggtttcgtacaccctcaaagagcacactgtccataacggagga
tccactttccctgctctgaaacccatactgcagcagagaggggggcacggtaacctggtg
gccaataagacagagtttgctcggtactgttcattggccaactgctcaaccaatctacag
gtctctgctcaactggtgttaccacagagacacaacaacatgccgtactttgcacttggc
aatgggaagaccatcatgttgaacacaaccctggtgaacacgggagatgatgcattcctc
cccagactccagctccgattccccagtaacctgcactacatcaaagtgcttgatgcagag
gagaagtttgtgagctgtgacatttcagaggagaacaagacaatagtaggagtggattgc
agtgtgggaaacctatacctcagctctggggccaaggtcaatatcagttttctgttggat
gtgaaccagagtagtagtgttggtgacgttagcatctccatcaacgctagtggggacaat
tatgaaaacgaggatcttctgcatgacaactctgccactctgatgttaccactgagatat
ggagtacatgtcaacattcatgggtttatgactccaacatcctttgtatttggtgaccag
gcacctattccagttgattgctacacagagacattcaactacacttacaaggttgtcaat
attggtccaagcaaatctctcaacacgatagtggagattgatattcccaagatcctgtca
ccatatccatacagattactccacgtcacagacttccatacgtctcttggagaatgctcc
attcgaaacgactccattgcggtggaggatgcctgtgaggtgccacaatcctctttcatc
aaagaactggtcttcttcttctccaaaaacagcaaacgcaaaatgttctgtgcctatggt
gatgacctgtgcctgactctggagtgtagactaggagatatggacattgggaaagaagcc
accattcacatggaagtgaagttgaatcccaccgttctacagctctcacctggacgtcat
ggagtgatgctgatggagagtactggcatcatcacatcaccaagggaggaccctcaaacc
atcatcctacagaagatccctatcgctcaggttgtgttggaggcccacttcagccagaag
cctcaggcagcagtggaggtgtttatcattgtagtgagtctagtggtgggactcctgatc
ctggccctgctcatcttcgccctctggaagattggtttctttaaaaggcagtttaagaag
gaggatgagatcaggagggatagctgggactatgtaccaaaacatttgactaagactgag
agtagatcctaa
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integrated database retrieval system