Oncorhynchus mykiss (rainbow trout): 110520359
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Entry
110520359 CDS
T07259
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR isoform X1
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
110520359
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
omy04050
]
110520359
Cytokine receptors [BR:
omy04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
110520359
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Ortholog
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Motif
Pfam:
Death_EDAR
DUF4501
TNFR_c6
SCIMP
Chordopox_G3
Motif
Other DBs
NCBI-GeneID:
110520359
NCBI-ProteinID:
XP_036830786
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Position
3:62947318..63007919
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AA seq
480 aa
AA seq
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MFQKGSHIESLFLCLLLVSCPPCLRSEYSSCGEFEFYNQTFSSCRPCPPCQPGQEPHMNC
GYGTKDENFVCVSCPAGKYSKGKYEICRRHKDCEGLYRATVLTPGTPDSDADCGPCLPGY
YIQENRPRNLYGMVCHSCQNAPRNTKECMLTKVPSVSTSSTTMFPHPHKDATGQGHLATA
LIIAMSTIFIMAIAIVLIIMFYILKAKPSGQACCSGQVVKAVEAQTNKQEDKKDVPDNIV
IFSEKDEFDKLKPTPPKTVKSENDASSENEQLLSRSMDSDEEAALERQGAADPNPSLCLL
NLGNKPDLCLLSLGLLDRDKTGSNPTSPINANISNGNANIINNNNYNKATGIQSRRKKIL
DLYARACSVAEGLSPTELPFDCLEKASRMLSSSYSSEAAVVKTWRHLAESFGLKRDEIGG
MSDGLQLFERISTAGYSIPDLLTRLVQIERLDAVESLCSDVLGGGDTHTVPLSSPRCASV
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaaaggaagtcacatagagtccctcttcctctgtttgttgttggtgtcctgt
cctccctgtctcaggtcagagtacagtagttgtggagagtttgaattctacaaccagacc
ttcagtagctgccggccctgccctccatgccagcctggacaggagccccacatgaactgt
ggctatgggactaaggatgagaactttgtgtgtgtgtcttgtcctgcggggaagtactca
aaggggaagtatgagatctgcaggagacataaggactgtgaaggtctgtaccgcgctaca
gtactcacacctgggacaccagacagtgacgcagactgtggaccctgcttacccgggtat
tacatccaggagaaccggcccaggaacctgtatgggatggtctgtcactcgtgtcagaac
gcaccgcgcaacactaaagagtgcatgcttaccaaagtccccagtgtctcaaccagcagt
actaccatgttccctcaccctcacaaagacgccacaggacagggtcacctagcaaccgct
ctcatcattgccatgtcaaccatcttcatcatggccatcgccatcgtcctcattatcatg
ttctacatcctcaaagccaagcccagcggacaggcgtgctgctcaggtcaggtggtgaag
gctgtggaggctcagaccaacaaacaggaggacaagaaagatgttccagacaacattgta
attttctctgaaaaggatgaattcgacaaactcaaacccacgcctccgaagacggtgaaa
agtgagaatgatgcatcgtcagagaacgagcagctgttgagtcgtagtatggacagtgat
gaggaggcagcgttggagaggcagggggcggctgatcctaaccccagcctctgtcttctg
aacctgggcaacaagccggacctctgcctgctctctctggggcttctcgacagggataag
actggatccaaccccaccagccctatcaacgctaacattagcaatggcaatgctaacatc
atcaataacaacaactacaacaaggctacagggattcagagccggaggaagaagatcctg
gatctgtatgctagagcctgcagtgtggccgagggtctgagtcctacagaactaccgttt
gactgtctggagaaggccagtcggatgctgagctcctcctacagtagcgaggcagccgtg
gtgaagacctggagacacctggcagagagctttggcctgaagagggatgagatcggaggg
atgagtgacggcctgcagctgtttgaaaggatcagtaccgccggctatagcatcccagac
ctgctcaccagactagtgcagatagagagactggatgctgtggagtcactgtgttctgat
gtactgggaggaggagacacacacactgttcctctgtcctcaccacgctgtgcaagcgtc
tga
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