Oncorhynchus mykiss (rainbow trout): 110520385
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Entry
110520385 CDS
T07259
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110520385 (ctcf)
03036 Chromosome and associated proteins [BR:
omy03036
]
110520385 (ctcf)
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110520385 (ctcf)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110520385 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
110520385
NCBI-ProteinID:
XP_021453360
Ensembl:
ENSOMYG00000014335
UniProt:
A0A8C7VJN7
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Position
1:complement(28098876..28106017)
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AA seq
801 aa
AA seq
DB search
MKYSFLVQVLPMDGGPTDVVVEAKDSITYEGEEVVADLLQQAAEGVMDQQPVGEGGLDPQ
ELVDGVNVEMMVMDSLDPALLQMKTEVMDAPVITAHEATVTTVDETQIITLQVVNLEEQQ
LGGLGELQLVQVPVSAVPVTQATVEELQGTFVDATAMPKDGNPMICHTLPLPEGFQVVKV
GANGEVETVEQDELQHQEEQQVQPEEEEEEEELHCETQPDDPQWTTDPDYQPPAKKTAKK
AKKSKLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKK
TFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKC
QDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLC
SYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT
VIARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCC
RQERHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTF
TRRNTMARHAENCNGDPTEGENGTPPKRGRGGRKRKMRSRKDDDDDDSEDNADPELDDID
EEDEDAEEALLEEEEEEEMELEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPASPAKASK
AAPKGKAAAAAAIIQVEDENTGVIENIIVKNEPEAEQAAIEVVVEQSEEAEAGVETVELP
VAEAAPNGDLTPEMILSMMDR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctggtgcaggtattaccgatggacggcggaccaaccgatgttgtg
gttgaggccaaggacagcatcacctatgagggggaggaggtggtggcagacctgctccag
caagcagcagagggggtaatggaccagcagcctgtgggagaggggggcctggatccccag
gagctggtggatggagtcaatgtggagatgatggtaatggattccctggaccctgccctg
ctgcagatgaagactgaggtgatggacgcccctgtgatcacagcccacgaggccacggtc
accacagtggatgagacccagatcatcactctgcaggttgtcaatttggaggagcagcag
cttggaggccttggggagctacagctggtccaggtgcctgtctctgctgtgcctgtaacg
caggccactgtagaggagctacagggcaccttcgtggacgccacggccatgcccaaagat
ggaaaccctatgatctgccacaccctgcccctgccagagggcttccaggtggtgaaggtg
ggtgcgaatggtgaggtggagacggtggagcaggatgagctccagcaccaggaggagcag
caggtccagcctgaggaggaggaggaggaggaggagctgcactgcgagacccagcctgac
gacccacagtggaccacagacccagactaccaacccccggccaagaagactgccaagaaa
gcaaagaagagcaagctgcgctacaacactgagggggacaaagacaacatggacgtgtct
gtctatgactttgaggaggagcagcaggaggggatgctctctgaggtcaatgcagagaag
gtggtgggcaacatgaagccccccaaacccaccaagatcaagaagaagggtgtgaagaaa
acattccagtgtgagctgtgtagctacacctgtccccgccgctccaacctggaccgacac
atgaagagccacacggacgagaggccacacaagtgccatctgtgtggaagggccttcagg
actgttaccctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgt
caagattgtgacatggccttcgtgaccagtggagagctggtccgacatcgtcgctacaaa
cacactcatgagaaacccttcaagtgctccatgtgtgactatgccagtgtagaggtgagc
aagctaaagcggcacatccgttcccacactggggagcgtccgttccagtgcagtctgtgc
agctatgccagcagagacacctacaagctgaagagacacatgaggacacactcaggagag
aagccgtatgaatgctacatctgccacgcccgtttcacccagagtggaaccatgaagatg
cacatcctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacaca
gtcatcgcccgcaagagtgacctgggcgtccatctgcgtaagcagcactcgttcattgag
cagggacggaaatgccgttactgtgatgctgtgttccacgagcgctatgctctcatccag
caccagaagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgc
agacaagagcgtcacatgctgatgcacaggcgcacgcacacaggagagaagccgtacgcc
tgtagccagtgtgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgc
taccatgaccccaactttgtgcctactgcctttgtgtgcaccaagtgtggcaagaccttc
acccgcaggaacaccatggccagacatgcagagaactgtaatggggatcctactgaagga
gagaacggaaccccacccaagagaggacggggtgggaggaagaggaagatgcgctcaagg
aaggacgatgatgacgacgatagtgaggacaatgctgatcctgagctggatgacattgat
gaagaggatgaggatgccgaagaggcactgctggaggaagaggaggaggaggagatggag
ttggagcaggctccacccaccaagcctatccccgcccctgtggagccgcccgtcaagagg
aaacggggtagaccccccaagaatgcgcccaaacctgcctcacctgccaaagctagcaag
gctgcccctaagggcaaggctgctgcagcagcagccatcatccaggtggaggatgagaat
acaggtgtcatagagaacatcatagtgaagaatgagccagaggctgagcaggctgccata
gaggtggtggtggagcagtcggaggaggcagaggcaggggtggagacagtggagctgcct
gtagcagaggctgcccccaatggagatctcacccctgagatgatcctcagcatgatggac
cggtga
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