Oncorhynchus mykiss (rainbow trout): 110520475
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Entry
110520475 CDS
T07259
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04382
Cornified envelope formation
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110520475
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110520475
09142 Cell motility
04820 Cytoskeleton in muscle cells
110520475
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110520475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110520475
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110520475
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110520475
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110520475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110520475
NCBI-ProteinID:
XP_036830920
LinkDB
All DBs
Position
3:69469776..69595798
Genome browser
AA seq
1681 aa
AA seq
DB search
MSGAMQATHQRQLKNLRVLILCISVAILASGVDAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGLLGSQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGSDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSAGQPGYDGQPGYNGQMGRKGQKGDTLELSVFME
RFRGDSGQPGYPGLVGPQGYPGRSGYRGLPGPQGPQGYPGLPGPKGTMTKVLKGVKGEPG
DAGKPGPQGNSTHSQTGPITGPNGIKGEKGLKGDTGPEADNKGETGVIGMPGQRGIPGRD
GEQGLRGDLGEPGLRGRDGQKGARGEPGELIYHDGPSGGQDRVGPPGPPGQLGPQGQRGL
EGEKGLPGRAGPPARKDHDQQQVVDLWGPFGEPGVKGEMGEPGELGIPALSPGPPGINGL
PGLGGPPGPPGSWADFYKGFSGPRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPAGSQ
GDTGKSGEVGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGELIQAKEKGYAGDPGDP
GATGDPGIQGFPGPSGINGFPGNRGPSGDAPAGLTGEKGYQGRPGLPGLLGQMGEPGRVL
GATKGVQGLQGDDGERGHPGIKGQAGDPGVSGCSPRGDGEQNDITGDCDAIPGPPGIPGP
PGPHGLEGFLGLPGQKGSTGLLGDNGAKGEIGDQGRGGSPGYPGFRGLHGDLGQPGSKGN
SGTQGLPGQQGRNGEPGEKGPHGEIWGASTGQRGEVGLPGEQGPKGLSGEPGNEGYPGMG
GMPGMIGFKGDVGPSGLQGEQGGPGAAGKYGWPGVPGTAGVPGPTGSTGQPGLSGNRGDQ
GDPGTPGPIGLKGTLGEFGSQGAEGNTGEQGDPGVPGPTGHSGLPGFKGIKGSRGMSGFG
GMPGESGLKGFSGQKGETGDPGGFGQKGIMGDYGSKGDRGLRGPTGEKPHIPRQIIKDMK
GTKGEDGTTGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFQGNPGAQGLPGPKGM
PGLTGSNGISGFPGMSGHRGDKGNPGAYGSSGDPGVKGVKGEGGAVIDMPGSTGLRGEDG
FPGVPGQKGYIGNLGDRGGGGFHGIEGMKGVPGEPGTGGPVGSDGQQGFPGNQGTKGWPG
VPGESGIHGQPGFPGQRGFPGLKGIFGLDGLKGQKGIPGLPGQDNFGTPGDPGAKGARGE
TGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTSDRPGPSGEPGFPGPKG
LPGFPGPRGLPGEPSQYGEKGLTGQYGVTGFPGLKGKQGDQGPSGYKGQSGVSGKKGVKG
GQGMMGFPGRSGFQGDRGPSGPKGSTGLTGYPGAPGNQGPAPLPTRMPGERGAPGPQGIR
GPEGVRGESGPKGPPGDPGYFGPQGQKGMPGVGGRPGAPGYRGNVGGRGHLGLQGMEGHH
GNPGTTGLHGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQD
LGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEGDIKPYISRC
SVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDF
RTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFHAEPASETLKAGQLLSRISRCQVCMKN
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaatgcaggcgacacaccagagacaactgaagaacctgagggttctgatt
ctatgtatttcggtggccatcctagcgtcgggagttgacgcaggtggaaagaagcacagt
gggccatgtggagggagagactgcagcggagggtgtcaatgcttccctgagaaaggtgcc
agaggccagcctggtcttcttggttctcagggcccccaggggcctccaggacgtctaggg
gacccaggagtccagggagtccagggagagaagggcgacaggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttccgggtcggacggtatt
cctggccacccaggacaggctgggcctcgtgggaaacctggagcagacgggtgcaacgga
acacacggagactcagggtcggcagggcaaccaggctacgatggccagcccgggtataat
ggtcagatgggcaggaagggacagaagggagacactctggagctgagtgtgttcatggag
cgcttcaggggagattcagggcagcccggatatcctggattagttggtcctcagggttac
ccaggtcggtctggctacagaggactcccgggaccacagggcccacaagggtatcctggt
cttcctgggccaaagggcaccatgacaaaagtgttgaaaggggtcaaaggagaacctggt
gacgctggaaagcctggtccccaagggaactccacccattcccagaccggtccaattact
ggacccaatggcataaagggtgagaaagggttgaaaggtgatactggtcctgaggctgac
aacaaaggagagactggtgttatagggatgcctggacaacggggcattcctggtcgggat
ggagagcaaggactgaggggggacttgggagaaccaggactgaggggcagagatggtcaa
aagggtgccagaggagaaccaggggagctgatttatcacgatggtccctcaggagggcag
gacagagttggtccccctggtcctcctggacagctgggtccccagggccagaggggtctg
gagggggagaaaggtcttccaggccgcgctggacctcctgccaggaaggatcatgatcaa
caacaagtggtggatctgtggggtccatttggagagccgggggtaaagggagagatgggc
gaacctggagagctaggtatccctgccctcagccccggacccccgggtatcaatggcctg
cctgggctcgggggcccacccggaccaccaggatcatgggcggacttctacaagggattt
tcagggccgagagggcggccaggctctgcgggaagaaaaggactgaaaggtgatcacggg
ttgtgcgagtgcaacattgtccattcccctccgggcctgcccggccctgctggtagccaa
ggcgacactggaaagagtggcgaggttggtcagcagggagagtcaggagagccaggaccc
cgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggtccaaagggc
aggaagggcgagttaattcaggccaaagagaaaggatatgccggggacccaggagaccca
ggtgcgacaggtgacccaggaatacagggcttccctgggcccagtgggatcaatggattc
cctgggaatcgtggtccttcaggagatgcacctgctgggctcactggagaaaaaggttat
cagggccggccgggtctgcctgggttgttgggacagatgggagaaccaggacgggttcta
ggtgcaactaaaggggttcaagggttgcaaggcgatgatggggagcggggtcatcctggt
atcaaaggtcaagctggcgatccaggagtgtctggctgtagtccgagaggagatggagaa
cagaatgacatcacaggtgattgcgatgccatacctggaccacccggtataccaggacca
ccaggaccccacgggttagaaggtttcctaggtctcccaggtcaaaaaggatcaacaggt
ctacttggagataacggggccaaaggagagataggagatcaaggcagaggagggtcacct
ggatatccaggttttaggggcctccatggagacttgggtcagcctggctcaaagggtaat
tctggaacccaaggtctgccaggtcaacagggtcggaacggggagccaggagagaaggga
cctcacggggagatctggggagcgtcgaccggacaacgtggagaagtgggtcttcctgga
gagcagggacctaaagggctcagcggagagcctggaaacgagggttacccagggatgggt
ggcatgcctggtatgattgggttcaagggcgacgtaggtccttcaggtctgcaaggggag
caaggaggaccgggagctgctgggaagtatggctggccaggtgtacccggaacggctggt
gtccctggaccaacaggaagcaccggacaaccaggtttgagcggaaacaggggtgatcag
ggggaccctggcacaccagggcccataggactaaaggggacactgggagagtttggtagt
cagggcgctgagggaaacaccggagagcagggtgaccccggagtgccaggacctacagga
cactctggcctgccagggttcaagggtatcaaagggtctcgtggcatgtcagggtttgga
ggaatgcctggtgagtcgggcctgaagggcttctctggacagaaaggagagactggcgat
cccggcggatttggacagaaaggaatcatgggcgactatggttcaaagggtgaccgtggt
ctgaggggtccaactggcgagaaaccccacatccctcgtcagatcatcaaagacatgaag
gggacaaagggagaagatggaaccacaggacagatcggattcactggacccagaggtcct
aaaggttttcccggtgttccgggaatggagggctaccacggcgttcccggagaccccagc
gatgagaagggtttccaaggcaacccaggcgcacagggacttccggggccaaaaggaatg
cctggtctgacaggatcaaacggaatcagcggctttcccgggatgtctggtcacaggggg
gataaaggtaaccccggtgcctacggatcctcaggagatccaggagtgaagggtgtcaaa
ggtgaggggggtgccgtaatcgacatgcccggatccacaggactgaggggggaggatggt
ttccctggggttccaggtcagaagggctacattgggaatctgggagacaggggaggtgga
ggtttccatggtattgagggcatgaagggcgtgccaggtgaacctggcacaggaggacct
gtaggatctgatggtcaacaagggtttccaggcaaccagggtacgaagggatggcctggg
gtccccggagaatcaggcatacatggacaaccaggcttccccggacagagaggtttcccg
ggactaaagggtatattcggactggatgggctgaagggtcagaagggaatccctggactt
ccaggtcaggataactttggaaccccaggtgaccccggtgctaagggagcgaggggagag
acaggtatacccaactccgaggtcgggacacccggatcgctgggtttgaagggagttcaa
ggacaaccaggtgaccagggccaggtgggacccccagggtttcagggcccccaagggcca
cagggcacctcagacagacccggaccgtcaggagaacctggcttccctggacccaaagga
ctgccaggtttccctgggccccgtggtttacctggtgagccctctcaatatggagagaag
ggtttaactggccagtatggcgtcactggattccctggtctgaaaggaaagcagggggat
cagggaccatcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaaggga
ggtcaagggatgatgggatttcctggtaggtctggtttccaaggagaccgaggtccttcc
ggcccaaaaggaagtactggactcacaggttatccaggagccccaggtaaccagggccca
gccccactacccaccaggatgccaggagagaggggtgctccaggtcctcagggtatccga
ggaccggagggggtacgaggggagagcggccctaaaggaccccctggagatccaggctac
tttgggccccaggggcagaaggggatgccaggggtgggtggcagaccaggtgcccctggg
taccgtgggaatgttggagggaggggccatctcggtctgcagggcatggaaggtcaccat
ggtaacccaggaactacagggttgcatggcatgccgggccgcagtgtgagcgtgggatac
ctgctggtgaagcacagccaatcagagcaaacccccatgtgccccgtgggcatgtcgaag
ctgtgggacggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggac
ctaggtctggcgggctcctgcctccctcgtttcaacaccatgcccttcctgtactgcaac
cccggagacgtctgctactacgccagccgcaacgacaaatcctattggctgtccaccacc
gcgccccttcccatgatgcccgtggaggaaggtgatatcaaaccctacatcagccgctgc
tctgtgtgcgaagctccgtccgtcgccatcgccgtgcacagccaggatattaccatccca
caatgccctgctggctggcgcagcttgtggattggctactccttcctcatgcacacagca
gcaggtgacgagggtgggggtcagtctctgtcgtctcctggttcctgtctggaggacttc
cgtaccacgcccttcatcgagtgtaacggggccaagggcacctgccactacttcgccaac
aaacacagcttctggctcacctccatcgagcagtccttccatgcagaacctgcctcagag
accctgaaagcaggccagctcctctcacgcatcagccgttgtcaggtctgcatgaagaac
ctgtga
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integrated database retrieval system
