Oncorhynchus mykiss (rainbow trout): 110520475
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Entry
110520475 CDS
T07259
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110520475
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110520475
09142 Cell motility
04820 Cytoskeleton in muscle cells
110520475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110520475
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110520475
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110520475
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110520475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110520475
NCBI-ProteinID:
XP_036830920
LinkDB
All DBs
Position
3:69469776..69595798
Genome browser
AA seq
1681 aa
AA seq
DB search
MSGAMQATHQRQLKNLRVLILCISVAILASGVDAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGLLGSQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGSDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSAGQPGYDGQPGYNGQMGRKGQKGDTLELSVFME
RFRGDSGQPGYPGLVGPQGYPGRSGYRGLPGPQGPQGYPGLPGPKGTMTKVLKGVKGEPG
DAGKPGPQGNSTHSQTGPITGPNGIKGEKGLKGDTGPEADNKGETGVIGMPGQRGIPGRD
GEQGLRGDLGEPGLRGRDGQKGARGEPGELIYHDGPSGGQDRVGPPGPPGQLGPQGQRGL
EGEKGLPGRAGPPARKDHDQQQVVDLWGPFGEPGVKGEMGEPGELGIPALSPGPPGINGL
PGLGGPPGPPGSWADFYKGFSGPRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPAGSQ
GDTGKSGEVGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGELIQAKEKGYAGDPGDP
GATGDPGIQGFPGPSGINGFPGNRGPSGDAPAGLTGEKGYQGRPGLPGLLGQMGEPGRVL
GATKGVQGLQGDDGERGHPGIKGQAGDPGVSGCSPRGDGEQNDITGDCDAIPGPPGIPGP
PGPHGLEGFLGLPGQKGSTGLLGDNGAKGEIGDQGRGGSPGYPGFRGLHGDLGQPGSKGN
SGTQGLPGQQGRNGEPGEKGPHGEIWGASTGQRGEVGLPGEQGPKGLSGEPGNEGYPGMG
GMPGMIGFKGDVGPSGLQGEQGGPGAAGKYGWPGVPGTAGVPGPTGSTGQPGLSGNRGDQ
GDPGTPGPIGLKGTLGEFGSQGAEGNTGEQGDPGVPGPTGHSGLPGFKGIKGSRGMSGFG
GMPGESGLKGFSGQKGETGDPGGFGQKGIMGDYGSKGDRGLRGPTGEKPHIPRQIIKDMK
GTKGEDGTTGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFQGNPGAQGLPGPKGM
PGLTGSNGISGFPGMSGHRGDKGNPGAYGSSGDPGVKGVKGEGGAVIDMPGSTGLRGEDG
FPGVPGQKGYIGNLGDRGGGGFHGIEGMKGVPGEPGTGGPVGSDGQQGFPGNQGTKGWPG
VPGESGIHGQPGFPGQRGFPGLKGIFGLDGLKGQKGIPGLPGQDNFGTPGDPGAKGARGE
TGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTSDRPGPSGEPGFPGPKG
LPGFPGPRGLPGEPSQYGEKGLTGQYGVTGFPGLKGKQGDQGPSGYKGQSGVSGKKGVKG
GQGMMGFPGRSGFQGDRGPSGPKGSTGLTGYPGAPGNQGPAPLPTRMPGERGAPGPQGIR
GPEGVRGESGPKGPPGDPGYFGPQGQKGMPGVGGRPGAPGYRGNVGGRGHLGLQGMEGHH
GNPGTTGLHGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQD
LGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEGDIKPYISRC
SVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDF
RTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFHAEPASETLKAGQLLSRISRCQVCMKN
L
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaatgcaggcgacacaccagagacaactgaagaacctgagggttctgatt
ctatgtatttcggtggccatcctagcgtcgggagttgacgcaggtggaaagaagcacagt
gggccatgtggagggagagactgcagcggagggtgtcaatgcttccctgagaaaggtgcc
agaggccagcctggtcttcttggttctcagggcccccaggggcctccaggacgtctaggg
gacccaggagtccagggagtccagggagagaagggcgacaggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttccgggtcggacggtatt
cctggccacccaggacaggctgggcctcgtgggaaacctggagcagacgggtgcaacgga
acacacggagactcagggtcggcagggcaaccaggctacgatggccagcccgggtataat
ggtcagatgggcaggaagggacagaagggagacactctggagctgagtgtgttcatggag
cgcttcaggggagattcagggcagcccggatatcctggattagttggtcctcagggttac
ccaggtcggtctggctacagaggactcccgggaccacagggcccacaagggtatcctggt
cttcctgggccaaagggcaccatgacaaaagtgttgaaaggggtcaaaggagaacctggt
gacgctggaaagcctggtccccaagggaactccacccattcccagaccggtccaattact
ggacccaatggcataaagggtgagaaagggttgaaaggtgatactggtcctgaggctgac
aacaaaggagagactggtgttatagggatgcctggacaacggggcattcctggtcgggat
ggagagcaaggactgaggggggacttgggagaaccaggactgaggggcagagatggtcaa
aagggtgccagaggagaaccaggggagctgatttatcacgatggtccctcaggagggcag
gacagagttggtccccctggtcctcctggacagctgggtccccagggccagaggggtctg
gagggggagaaaggtcttccaggccgcgctggacctcctgccaggaaggatcatgatcaa
caacaagtggtggatctgtggggtccatttggagagccgggggtaaagggagagatgggc
gaacctggagagctaggtatccctgccctcagccccggacccccgggtatcaatggcctg
cctgggctcgggggcccacccggaccaccaggatcatgggcggacttctacaagggattt
tcagggccgagagggcggccaggctctgcgggaagaaaaggactgaaaggtgatcacggg
ttgtgcgagtgcaacattgtccattcccctccgggcctgcccggccctgctggtagccaa
ggcgacactggaaagagtggcgaggttggtcagcagggagagtcaggagagccaggaccc
cgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggtccaaagggc
aggaagggcgagttaattcaggccaaagagaaaggatatgccggggacccaggagaccca
ggtgcgacaggtgacccaggaatacagggcttccctgggcccagtgggatcaatggattc
cctgggaatcgtggtccttcaggagatgcacctgctgggctcactggagaaaaaggttat
cagggccggccgggtctgcctgggttgttgggacagatgggagaaccaggacgggttcta
ggtgcaactaaaggggttcaagggttgcaaggcgatgatggggagcggggtcatcctggt
atcaaaggtcaagctggcgatccaggagtgtctggctgtagtccgagaggagatggagaa
cagaatgacatcacaggtgattgcgatgccatacctggaccacccggtataccaggacca
ccaggaccccacgggttagaaggtttcctaggtctcccaggtcaaaaaggatcaacaggt
ctacttggagataacggggccaaaggagagataggagatcaaggcagaggagggtcacct
ggatatccaggttttaggggcctccatggagacttgggtcagcctggctcaaagggtaat
tctggaacccaaggtctgccaggtcaacagggtcggaacggggagccaggagagaaggga
cctcacggggagatctggggagcgtcgaccggacaacgtggagaagtgggtcttcctgga
gagcagggacctaaagggctcagcggagagcctggaaacgagggttacccagggatgggt
ggcatgcctggtatgattgggttcaagggcgacgtaggtccttcaggtctgcaaggggag
caaggaggaccgggagctgctgggaagtatggctggccaggtgtacccggaacggctggt
gtccctggaccaacaggaagcaccggacaaccaggtttgagcggaaacaggggtgatcag
ggggaccctggcacaccagggcccataggactaaaggggacactgggagagtttggtagt
cagggcgctgagggaaacaccggagagcagggtgaccccggagtgccaggacctacagga
cactctggcctgccagggttcaagggtatcaaagggtctcgtggcatgtcagggtttgga
ggaatgcctggtgagtcgggcctgaagggcttctctggacagaaaggagagactggcgat
cccggcggatttggacagaaaggaatcatgggcgactatggttcaaagggtgaccgtggt
ctgaggggtccaactggcgagaaaccccacatccctcgtcagatcatcaaagacatgaag
gggacaaagggagaagatggaaccacaggacagatcggattcactggacccagaggtcct
aaaggttttcccggtgttccgggaatggagggctaccacggcgttcccggagaccccagc
gatgagaagggtttccaaggcaacccaggcgcacagggacttccggggccaaaaggaatg
cctggtctgacaggatcaaacggaatcagcggctttcccgggatgtctggtcacaggggg
gataaaggtaaccccggtgcctacggatcctcaggagatccaggagtgaagggtgtcaaa
ggtgaggggggtgccgtaatcgacatgcccggatccacaggactgaggggggaggatggt
ttccctggggttccaggtcagaagggctacattgggaatctgggagacaggggaggtgga
ggtttccatggtattgagggcatgaagggcgtgccaggtgaacctggcacaggaggacct
gtaggatctgatggtcaacaagggtttccaggcaaccagggtacgaagggatggcctggg
gtccccggagaatcaggcatacatggacaaccaggcttccccggacagagaggtttcccg
ggactaaagggtatattcggactggatgggctgaagggtcagaagggaatccctggactt
ccaggtcaggataactttggaaccccaggtgaccccggtgctaagggagcgaggggagag
acaggtatacccaactccgaggtcgggacacccggatcgctgggtttgaagggagttcaa
ggacaaccaggtgaccagggccaggtgggacccccagggtttcagggcccccaagggcca
cagggcacctcagacagacccggaccgtcaggagaacctggcttccctggacccaaagga
ctgccaggtttccctgggccccgtggtttacctggtgagccctctcaatatggagagaag
ggtttaactggccagtatggcgtcactggattccctggtctgaaaggaaagcagggggat
cagggaccatcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaaggga
ggtcaagggatgatgggatttcctggtaggtctggtttccaaggagaccgaggtccttcc
ggcccaaaaggaagtactggactcacaggttatccaggagccccaggtaaccagggccca
gccccactacccaccaggatgccaggagagaggggtgctccaggtcctcagggtatccga
ggaccggagggggtacgaggggagagcggccctaaaggaccccctggagatccaggctac
tttgggccccaggggcagaaggggatgccaggggtgggtggcagaccaggtgcccctggg
taccgtgggaatgttggagggaggggccatctcggtctgcagggcatggaaggtcaccat
ggtaacccaggaactacagggttgcatggcatgccgggccgcagtgtgagcgtgggatac
ctgctggtgaagcacagccaatcagagcaaacccccatgtgccccgtgggcatgtcgaag
ctgtgggacggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggac
ctaggtctggcgggctcctgcctccctcgtttcaacaccatgcccttcctgtactgcaac
cccggagacgtctgctactacgccagccgcaacgacaaatcctattggctgtccaccacc
gcgccccttcccatgatgcccgtggaggaaggtgatatcaaaccctacatcagccgctgc
tctgtgtgcgaagctccgtccgtcgccatcgccgtgcacagccaggatattaccatccca
caatgccctgctggctggcgcagcttgtggattggctactccttcctcatgcacacagca
gcaggtgacgagggtgggggtcagtctctgtcgtctcctggttcctgtctggaggacttc
cgtaccacgcccttcatcgagtgtaacggggccaagggcacctgccactacttcgccaac
aaacacagcttctggctcacctccatcgagcagtccttccatgcagaacctgcctcagag
accctgaaagcaggccagctcctctcacgcatcagccgttgtcaggtctgcatgaagaac
ctgtga
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integrated database retrieval system
