Oncorhynchus mykiss (rainbow trout): 110520529
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Entry
110520529 CDS
T07259
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110520529
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110520529
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110520529
NCBI-ProteinID:
XP_036830985
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All DBs
Position
3:complement(72264378..72266650)
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNSGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGVGSSGVGQRLESPGCHGGSASSGYTHMNGWANGAYSGQV
AAAAAAAAMMQEAQLVYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSQGY
MSASPSGYGGITYTQHQSSGVSSSAAMSTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHAMPQHYQSATAAVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccattcccctggaccccaaacgaacacaaat
tcggggcagacgggaccgaacagcgggtccaaagcgaatcaggaccgggtgaagcgtcca
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcccaagagaacccc
aaaatgcacaactccgagatcagcaagcggctgggcgcggagtggaaggtgatgacggaa
gcggagaagagacccttcatcgatgaagcgaagcggttacgagccatgcacatgaaggag
cacccggattacaagtacagaccaagacggaagaccaagaccctgctgaaaaaggacaaa
tactctctggctggtggcctgctctctggggctggcggtggtggaatgggtctgggggtc
ggggtgggttcatccggggtcggccagaggttagagagccccgggtgccacgggggctcc
gccagctcaggctacacgcacatgaacggctgggcgaacggtgcgtactcggggcaagtg
gctgcagcagctgcggccgcggcgatgatgcaggaggcgcagctagtttacagccagcac
ccgggcagcgggcaccaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcgctccagtacagccccatctcgaactctcagggctac
atgagcgcctctccgtccggctacggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctccgctgccatgagcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagactccacgca
atgccgcagcattaccagagtgcgacggctgcggtgaacggaacggttccgttaacacat
atatag
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