Oncorhynchus mykiss (rainbow trout): 110520578
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Entry
110520578 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
110520578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110520578
03041 Spliceosome [BR:
omy03041
]
110520578
03036 Chromosome and associated proteins [BR:
omy03036
]
110520578
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110520578
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110520578
mRNA cycle factors
Common to processing body (P body) and stress granule
110520578
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110520578
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110520578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
110520578
NCBI-ProteinID:
XP_021453645
Ensembl:
ENSOMYG00000025424
UniProt:
A0A8C7RYD1
LinkDB
All DBs
Position
3:74118329..74145750
Genome browser
AA seq
698 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNDSPGGWDGGRSNG
FTNGYHDNRNGGRGGPPRNDRGFGGGQDGGGWGSAPRQDAAYNSFGGRGKSSFYSDRGST
GGRGGYQRGGYGGGGGGNNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDD
IPVEATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQ
TGSGKTAAFLVPVLSQIYTQGPGDAAAAAKNGQDSGKYGRRKQYPLSLVLAPTRELALQI
YEESRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCN
YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIF
LAVGRVGSTSENITQKVVWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLV
FVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLD
ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQE
VPSWLESLGYENQHKGNTGRGRSKRFSSGGFGARDYRQTPGGGGFGGGGRGGPRTGGHGG
GGGSRGGGFGGGNSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggttgtcgataatccacacggtctagatcagcagcttgctggcctagac
ttgaactcagacggacagggaggaggcactggccggcgatacattccacctcacttgagg
aacaaagaggtttccaaaaacgactctccaggaggatgggatggcggacgcagcaacggc
ttcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agagggtttggtggtggacaagatggtggaggctggggaagtgctcccagacaagatgca
gcctataacagctttggagggaggggcaagtcttccttctacagcgaccgtggatcaaca
gggggcagagggggttatcagcgtggagggtatggtggtggtggtggtggtaacaaccgt
tggcaggaagactccagagatgacgaggactggtccaaacccagtcccgctaacgaacgc
ctggaagcggagttgttctcaagcggcaacactggtattaactttgagaaatacgatgac
attcccgtggaggccactggctccaactgcccgccacacatcgatagtttccatgatgtg
gacatgggggagatcatcatgagtaacattgccctgacccactacacacggcccaccccc
gtccagaaatacgctatccctgtcattaagtctaagagagacctcatggcctgcgctcag
actggctcgggtaagacggcagccttcctggtgccagtgctgagccagatctacacacag
gggcccggagacgccgcagcggctgccaagaacggacaggacagtggtaaatatgggcgc
cgtaagcagtatcccctctctctggtcctggctcccaccagagaactggccctgcagata
tacgaagagtccagaaagtttgcgtaccgctcccgtgtgcgtccctgcgttgtgtacgga
ggggctgacatcggccagcagatcagagacttggagcgaggctgtcatcttctggtggcc
acacctggacgcctggtggacatgatggagaggggcaagattggcctcgactactgcaac
tatttggtgctggatgaggctgacaggatgttggacatgggttttgagccccagatcaga
cgcatcgtggagcaggacaccatgccccctaaaggcatccgtcagaccatgatgttcagc
gccaccttccccaaggagattcagatgctggcgcgtgacttcctggaggactatatcttc
ctggctgtgggccgcgtgggctcaacctctgagaacatcactcagaaggtggtttgggtg
gaggacggtgacaagcgctccttcctcctggacctgctgaatgctacagtcattcccagt
gacgctcctgatgttcaggaggctgcagtgacacctggtaaggagtctctgacgttggtg
tttgtggaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggctac
gcctgcaccagtatccacggagatcgctcccagagagacagggaggaggcgctgaaccag
ttccgctccggacgctgccccattctggtggccaccgcggtggctgctcgtggtctggac
atctccaacgtcaagcacgtcatcaactttgacctgcccagcgacatcgaagagtacgtt
caccgtattggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttctttaac
gacaagaacagcaacatcaccaaagacctgctggacatcctggtggaggccaagcaggaa
gtaccctcctggctggagagcctgggttacgagaaccagcacaagggcaacacgggacgc
ggacgctctaagaggttttcctctggtggatttggtgccagggactaccggcagacgccc
ggcggcggtggctttggtggtggtggacgcggcggccctcgcaccggaggtcacggagga
ggaggagggagtcgtggaggtggctttggaggcgggaactcttatggtggtaacgacgct
ggctacggtggcaactacagccactccggtagtggaactgactggtggggcaactag
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