Oncorhynchus mykiss (rainbow trout): 110520622
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Entry
110520622 CDS
T07259
Name
(RefSeq) protocadherin-8-like isoform X1
KO
K16499
protocadherin delta 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110520622
Cell adhesion molecules [BR:
omy04515
]
Cadherins
Protocadherins
110520622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
110520622
NCBI-ProteinID:
XP_021453700
Ensembl:
ENSOMYG00000028618
LinkDB
All DBs
Position
3:77640330..77645420
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AA seq
971 aa
AA seq
DB search
MGFCGFRGVGECVVFAILFNSVQSTTTRYYTYEEDAPGTEIGNLSQDLKIDPAEDPQTSF
RFMQENNSCVIQMREIDGLLTVGETIDREQLCPRSPRCFVTFDIVAFSKEKFQLIHVEIE
VRDINDNSPQFLHNETTLEISENVQLDSRFPLDIAVDHDVGNNYIQSYHIAPSSHFIVDV
RSREDGVKYAELVLVKAMDREAEDSYTVEVTATDGGEPPRSGSMTVHIKVLDFNDNSPTF
EHNSLKVELYEDSPVGYQVLKVHAFDPDAGINGEVVYGFVEDTSSEAMRIFNIDRISGAV
TLKTLVDYEKKISYELKIKASDLGTNSIPSTCKVVVDVVDVNDNAPEITIKPKTSTSDDV
AYITEAAAEESFVALISTSDSDSGSNGYVRSSLHGHEHFKLQQAYGDSFMIVTTTTLDRE
TIPEYNLTVVAEDLGTPPFKTIKQYTIRVTDENDNAPLFSKSIYEVSVLENNIPGSYITT
VVARDLDRGKNAKVSYKLIDSEVVGEASISTYVSIDPVSGSLYSLRSFDFETLQQIELTI
QADDKGSPQLSSTSVIRIKVVDQNDNYPYFTFPVMINDSAEIPLPVNAPLGYLALRVQGQ
DEDEGMNGELSYRIVQGDSKIFSINKDTGEIALKQGLASAIGDVLEIKIALSDSGRSPLS
SSATIRFVVSDLQLSDDQLVIVLRSSDEESAGLDISVVVIIILGGGCTLLLIAIAIVVIT
CKLNRGGKDHDSKRDVTHSLFDSRHHPRLNSAEPNMFGDPRGFLNERTSSSLDESSLYEE
KSGELESQMFLPPKPFQPSSVWQGDKYYPQISSGIDQQSVKDSGKGDSDFNDSDSDISGD
GGKKNLRTFQPWAKGSFHAANTLAVDCQGTYCVIPTQSFQAPRDNAYTIGFIQAPVYNNA
HAYPHSWKDSGYNTSIPKARNTVQTFSNHTGTLPSYFTHQKRQSPAGLDEIQEHNQDITT
MATISEVATIL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggattctgcgggtttcgaggagttggagagtgcgtggtgtttgctattctgttcaac
tcggttcagtctacgactacaaggtactacacatatgaagaggatgcgcccgggacagag
attggaaatctgtctcaggatttaaagatagacccagcggaggaccctcaaacatctttc
cgcttcatgcaggagaacaattcgtgtgtgattcaaatgagggagattgatggactttta
actgttggggaaacaattgaccgggagcagctgtgcccgaggtccccgcggtgttttgtc
accttcgacatagttgccttctccaaagaaaagtttcagctgattcacgtagagatcgag
gtaagggacataaacgacaattcaccccagtttctccacaacgagacgacccttgaaata
tccgagaatgttcagctggactcccgattcccgttggacatcgctgttgaccatgatgtc
ggcaataactacatccaaagttaccatatcgctccctccagccatttcatagttgatgtg
cgcagcagggaggatggagtgaagtatgctgaacttgtgcttgtgaaagcaatggataga
gaggctgaagattcctatacagttgaagtgactgcaacagatggcggagagccacccagg
tccggatcaatgactgttcatatcaaagtgctagattttaatgacaacagcccaacgttt
gagcacaactcactaaaagttgaactttacgaggattctcctgtaggttaccaagtgctt
aaggtgcatgcttttgatccagatgcgggtatcaatggcgaggtagtgtatggatttgta
gaagacacatcatctgaagcaatgcgtatttttaatatagaccggatttccggtgctgta
actttaaaaacattggttgattacgagaagaagatatcctatgaactgaaaattaaagca
tccgatttaggcactaattctattccatcgacttgcaaagtggttgttgatgtcgtagat
gtaaatgataacgcaccagaaatcaccatcaagccaaagacctcgacgagtgacgatgtg
gcttacatcacggaggccgcagcggaggaaagttttgtggcgctaatcagcacctcggac
agcgactctggatcgaacggttacgtgcgcagtagcctacacgggcacgaacatttcaag
ttacaacaggcctacggggacagttttatgattgtaacaaccaccactttagatagagaa
acgatcccagagtataacctcactgtagtggctgaagaccttggaactcctcctttcaaa
accatcaagcagtataccatcagagtgacggacgagaacgacaacgcccccctcttcagt
aaatcaatttatgaagtttcagtcctggaaaataatattcccgggtcatatataactact
gttgtagcacgggaccttgatcggggtaaaaacgccaaagtgtcatataaactcatagac
tcagaggttgtcggggaggcttccatttcgacgtatgtgtctatagacccagtgtcaggg
tcattgtatagcctgagatctttcgattttgaaacgctccagcagattgaattaaccatc
caggctgacgacaagggctcacctcaactgtcaagcacatccgtgatcagaatcaaagtg
gttgatcagaacgacaactatccctattttacctttcccgttatgattaatgactctgct
gaaattcctcttcctgtcaatgcaccattggggtatctggcactacgggtccaaggtcag
gatgaggatgagggtatgaatggtgagctcagctacagaatcgtacaaggtgactctaag
atattttcaatcaataaagacactggagaaatagctttaaaacagggtctggcctctgct
attggagacgtgttggaaatcaagattgcactgagtgacagtgggagatcccctctctcc
agcagtgccaccattcgctttgttgtctcagacttgcagctctcagacgaccaacttgtc
attgtattacggtcaagtgatgaggaaagcgcaggcttggatatttcagtagtagtaatc
attatactcggcgggggttgtactctgctgctgattgccatagcaattgttgttatcaca
tgcaaactgaaccgaggagggaaggaccatgactccaagagagacgtgactcacagcctg
tttgactccaggcatcatcccaggctcaactctgcagaacccaacatgttcggtgaccca
agaggtttcctcaatgaaaggacttcttcatctcttgatgagtccagcctatatgaagag
aaaagtggagagttggagtcccagatgttcctgcctcccaagcctttccaaccatcatct
gtgtggcaaggggacaaatactacccgcaaattagcagtggcattgaccagcaaagcgtg
aaggacagtggaaaaggagacagtgacttcaatgacagtgactctgacatcagtggggat
ggaggcaagaagaaccttcgcaccttccagccctgggccaaaggttcattccacgccgct
aacaccctcgctgtggattgccaaggcacttactgtgtaattccaacccaaagcttccag
gctcccagagacaatgcatacacaataggttttatccaagcaccggtctacaacaatgcg
catgcctatccccactcctggaaagactccggctacaacacaagcattcccaaagcaaga
aacaccgtgcagacattctctaatcacaccggcaccctcccatcttacttcacacatcaa
aagagacaatctcctgccggacttgatgaaattcaggagcacaaccaagatattactaca
atggcaaccatatctgaagttgccaccattttgtaa
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